BAC Information

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BAC

Clone NameMSMg01-075E19
Chromosome9 (Build37)
Map Location 116,977,285 - 116,977,428
singlet/doubletsinglet
Overlap geneRbms3
Upstream geneGadl1, Tgfbr2, LOC100043817, LOC100043819, D730003K21Rik
Downstream geneLOC665840, LOC100039650, LOC100039681, Azi2, 2010110K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075E19.T7 (MSMg01no075_e19.b1)MSMg01-075E19.TJ (MSMg01no075_e19.g1)
ACCAG298151AG298152
length814721
length of high quality
(start - end)
144 (152 - 295)---
definitionCHROMAT_FILE: MSMg01no075_e19.b1 PHD_FILE: MSMg01no075_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:56 2005CHROMAT_FILE: MSMg01no075_e19.g1 PHD_FILE: MSMg01no075_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGAGATCCGCGGAATTC
CAGAAGCGTTTCCATCGCTCCTCCATATACGAGGATGATTCTGGAAAGGA
AACTGAGAGAGAGATCCTGTCACTCACAGGGCTGTGGGACTATGGCGCGA
GCAGCTGTGCATGAATAATGGGGAAGCTGTCAGGCAGTGGGGACCAAGGA
ATGACAGGGTCAACAGGTGGTCAGCCAGCCACCATGACTTTCATGGCCGG
TGTCCAGGAAAGGGGCCTGTGGAGAGGAGGGTAGTTGTGGGTTAGGGAAC
TAGAGCAGTGCAGGCGGTTTTTTTTTGTGCCGCAAAGGCTTCTGGTAATG
CGACATGGGGAGTTGTTTGACCCTCGCCCCACACATAGAGAAGATGTTAT
GTGCAGTCCCGTATGAGCCCCCCCCCCTTTGCCGAGTGAGCCCTCCTCTG
CCTCTGTAGTCCTACAGATTTTGCTCCGTTTTCTTGCTATTTGCCTTGCT
CTGCTGACTTCACACTCCCTCCGCCCCTTTTCCCTCTCTACTACGCCCCC
TCTTCCCCCCTTCGTTCTTTCCTCTCCCCTTTCTTCTCTCCCGCTTTACT
CCTCCGCTTTTCTTTCCCTCTTTTCCCCTCCCTCCTCTTCTCCTCTATCC
CCTTCCGCCGACTCCTCCCTCCTCCCCTTTTCTATCTCTCTTCCTCTTTC
TTCTCATCCCTATTTTTCTCACATTCGGCCTTCTCTACGCCTCATCTCCC
TTCTCTTACCCTTTTTTCTCTATTTCTCCTTCCCCCTTCCTCTTCTCTCC
TCCTTCCTTCTTTG
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATCTCGAACTCACTAAGGTGAAAGAA
AAATCCAGGAAAGGAGCTAAGGAACTGATTTTTTTGTTGTTGAGAAGAAG
CCCTCGATACCAAGATCATCTTTGGGGTACTGGTTCCTCTAACTCCATTC
CACTGACTTCTGATTGTATTTCCACAGGAAGAAAAGGATGAGAGAAGGAG
GTTCCAAAATGAAGCAGCCTAGACCCTGACGGTTAGGAACAGGTTCAAAA
GGATGGATGACTGCTCAGTCTGGCCTCTATATGGGCTAAAGAACCATACT
AGGGAGCAGAGAGAGCCTTCTGAGCTGAATAGCAATCAAAATGTACAGCC
GATGCATGAGGAGAAGATCCCAAATCCTGTTAGAACTCTATTGGGTACGG
AAACTCAGGCCTCACTGGCTTTCGAGGAGCATAGCCAGGATCGTTAATAG
AATGAAATTTCCACTTGATGTTGGAAACTGAAGAACTCAGACAGGATAAT
ACCAAGACACGGCACAGATGTGGTCTTCCCAGGACACAAATGAGTTTCCA
CACCAACCTTTTTGAATTCTACCACAGCAGCGAGAGCTTTGGATCAGATC
TAATGCCAGTTCCTGGATTAAGAAATAACCACGGCAACATTTGCCAGTAG
AAAGCTCTTAACCATACTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_e19.b1 MSMg01no075_e19.b1 CHROMAT_FILE:
MSMg01no075_e19.b1 PHD_FILE: MSMg01no075_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:56 2005
         (144 letters)



>mm_chr9_116977085_116977628
          Length = 544

 Score =  255 bits (132), Expect = 7e-73
 Identities = 141/144 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagctgtgcatgaataatggggaagctgtcaggcagtggggaccaaggaatgacagggtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 cagctgtgcatgaataatggggaagctgtcaggcagtggggaccaaggaatgacagggtc 285

                                                                       
Query: 61  aacaggtggtcagccagccaccatgactttcatggccggtgtccaggaaaggggcctgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 aacaggtggtcagccagccaccatgactttcatggccggtgtccaggaaaggggcctgtg 225

                                   
Query: 121 gagaggagggtagttgtgggttag 144
           |||| ||||| || ||||||||||
Sbjct: 224 gagaagaggggaggtgtgggttag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 544
Length adjustment: 8
Effective length of query: 136
Effective length of database: 536
Effective search space:    72896
Effective search space used:    72896
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)