BAC Information

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BAC

Clone NameMSMg01-075J16
Chromosome9 (Build37)
Map Location 78,039,143 - 78,039,489
singlet/doubletsinglet
Overlap genenone
Upstream gene2310046A06Rik, 5730403I07Rik, Lrrc1, Klhl31, Gclc, LOC100042212, Elovl5, Gcm1, LOC666353, Fbxo9, Ick, C920006O11Rik
Downstream geneGsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5, Cd109, LOC384957, EG666456
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075J16.T7 (MSMg01no075_j16.b1)MSMg01-075J16.TJ (MSMg01no075_j16.g1)
ACCAG298380AG298381
length689674
length of high quality
(start - end)
396 (53 - 448)350 (57 - 406)
definitionCHROMAT_FILE: MSMg01no075_j16.b1 PHD_FILE: MSMg01no075_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:18 2005CHROMAT_FILE: MSMg01no075_j16.g1 PHD_FILE: MSMg01no075_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCGCTCTTATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XATCCGCGGAATTCCCAATCAGACACTATAATCTGTAGCCCTTGTTAAAC
TGTTTTTTTTTTTTTTTTTTTTTTTAAAAAACGCCCTATCGGGGCTGGAG
AGATGGCTCAGCAGTTAAGAACACTGACTGCTCTTCTGAAGGTCCTGAGT
TCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGGCTA
ACGCCCTCTTCTGGTGCATCTGAAGACAGCTACAGTGTACTTATGTATAA
TAATAAATAAATCTTTAAAAAAAAAAAAAAGGCAGCCGAGTGTGGTGGCA
CACGCCTTTAATCCCAGCACTGGGGAGGCAAAAGCAGGAAGATTTCTGAG
TTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCGGGACAGCCAGGGCTAC
ACAGAGAAACCCTGTCTCTAAAAACCAAAAAAAAAAAAAAAAAAAAAAAA
GCCCTACCATTACAAGAGAACTAATGATTTGGCATGGGATCAAAAGCAAA
TGTGTAAGTGTGCGCGCCCTGAGGCGATCACTAATTATGCTACCACAGTT
GTATTATACACTCCTGAGGAGACCTCACCCAAAGCAAAAAACCACGTGAT
TTTGGGGCACTACAACCACAGTCCCCAACAGCTGCAATT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXATTGTATTCATTGCCAACAAAAGTACAGTAGAGAGGAATCAGCGAC
TGGGAGCATCGTGCTGTGGTCCATTCTTGTGATGCTAAAATAGACACTCA
AGACTTTATTTTTGAAAACAAATTAGAGACGTACAGTTCTGGAGGTTGGG
CAAGCCAAAATTGAGGGGCTTTCTTTCACTTGCTGAGGATGGGGTAAAAT
AAAAGAAAAAAAAAAGTCGTGCCCTCCCTTGACGAGAGAGAAAGCGGCAA
GCTCGTGCATTCACCTTAGGGGTGGACTCCCGATGAATGGGAAACTTTGC
CCCCTCCCTCTCTTTCTCCTTAAAGAATTTTTTCCCCTTTCATTTTACCC
TGTACAATGGGGCAGATGGTTAAAAAGGTATGACCGCCATTCCTGGAACA
GTTATAGGCAGCCCATCAAGAACCGCTTGCAGTTAAGGTCACAGGCGCGG
CATAGCTCTGCCTTTGAGAACCAGAGGTCTGACCCGGATTAACCCTAGTT
CGTTTTTACTGCACGACGGCTTCGAAGCCTAAAACCCACGTCAGCTTGTC
CTTCATGTCCTAACCCGGTTCTTAGTGACCTTAATTTCTTCCCGGACGCG
GAACCCCTCATCCACTTTCACTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_j16.g1 MSMg01no075_j16.g1 CHROMAT_FILE:
MSMg01no075_j16.g1 PHD_FILE: MSMg01no075_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:18 2005
         (350 letters)



>mm_chr9_78038780_78039528
          Length = 749

 Score =  665 bits (344), Expect = 0.0
 Identities = 347/348 (99%), Gaps = 1/348 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtattcattgccaacaaaagtacagtagagaggaatcagcgactgggagcatcgtgctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 tgtattcattgccaacaaaagtacagtagagaggaatcagcgactgggagcatcgtgctg 651

                                                                       
Query: 61  tggtccattcttgtgatgctaaaatagacactcaagactttatttttgaaaacaaattag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 tggtccattcttgtgatgctaaaatagacactcaagactttatttttgaaaacaaattag 591

                                                                       
Query: 121 agacgtacagttctggaggttgggcaagccaaaattgaggggctttctttcacttgctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 agacgtacagttctggaggttgggcaagccaaaattgaggggctttctttcacttgctga 531

                                                                       
Query: 181 ggatggggtaaaataaaagaaaaaaaaaagtcgtgccctcccttgacgagagagaaagcg 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 530 ggatggggtaaaataaaagaaaaaaaaaagt-gtgccctcccttgacgagagagaaagcg 472

                                                                       
Query: 241 gcaagctcgtgcattcaccttaggggtggactcccgatgaatgggaaactttgccccctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gcaagctcgtgcattcaccttaggggtggactcccgatgaatgggaaactttgccccctc 412

                                                           
Query: 301 cctctctttctccttaaagaattttttcccctttcattttaccctgta 348
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 cctctctttctccttaaagaattttttcccctttcattttaccctgta 364


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 749
Length adjustment: 9
Effective length of query: 341
Effective length of database: 740
Effective search space:   252340
Effective search space used:   252340
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)