BAC Information

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BAC

Clone NameMSMg01-076H24
Chromosome9 (Build37)
Map Location 76,147,188 - 76,147,453
singlet/doubletsinglet
Overlap geneHcrtr2
Upstream geneMyo5c, Gnb5, Bcl2l10, LOC384954, Mapk6, Leo1, EG666190, LOC100042070, Tmod3, Tmod2, Lysmd2, Scg3, LOC100042107, Bmp5, EG620071, Hmgcll1, Gfral
Downstream geneC530008M07Rik, Tinag, LOC436082, 2310046A06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076H24.T7 (MSMg01no076_h24.b1)MSMg01-076H24.TJ (MSMg01no076_h24.g1)
ACCAG299062AG299063
length713721
length of high quality
(start - end)
283 (42 - 324)298 (71 - 368)
definitionCHROMAT_FILE: MSMg01no076_h24.b1 PHD_FILE: MSMg01no076_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:29 2005CHROMAT_FILE: MSMg01no076_h24.g1 PHD_FILE: MSMg01no076_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAATTC
CTCAGTGTGTGCCTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGC
GTGTGTGTGAATATATACTCAGGATATCTATGTTCTCTATCTAAGATTGG
TCATCCTCTGTGATTTACTTTAATTATCTCATCTCTGGCCTCCTCACGAT
GTTTCTGACTTCTCAAGGTAATGAGGATATATTTTTAAGAGCTGATGCTT
CTATTATCAAGAAAACTCTAAACAACACGCTCTCTGCATAGCGGTTTCAT
GAACGACGAATGAATAATTTTATTAGTATTGGGATTTACTTTGCATATAC
TCAATGGAGGCACACTGCTGAACCTAGATCTCAGCAGAACTACAGGACGC
AAGCTGTGATATGACCTCTCTTTTATTGATAAAATGATTTTCTACGAGTC
TCCTAACGAAAGCTGTTCTTGTAACCCTGCTTTTGCTATCCAAAAGTCTC
TACTGATTTTCTTCAGCTCTCAGATCTGAACTCACATTATTTTTCCCTGC
CCTCACGATTAGCTTTGCACTTTCAACCATCCCTTCTGATGCAGAAACCG
CCCATTCCGAGCATACATATGTTTTTCTCTTGTATTGCATTTGCAATTAT
GCATTGATTTATGATCCTTACACATTGCCCATTTATCAGTAACCTCATAT
TATCCGCTCCGAG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCACACCCCTAAGCCCCTTACCCCATAAAAC
CCCCTAGCTTTCGATTCTCATGGCTGACATCCATTATCTCCTGTGTGGGA
TGCATGTCAGTCCAGAGCTCCATCATTAAACTGCCTAATGTAATTACAGC
AAGATGAATTCTTGTGTTTCTTTGGGTGCTCTCTCACTCCTGAGACTAGA
GTGGGGGTCCCAAAAAGGGGGACTTACTTTTTGGGGGCTTGTCCGGCATT
TGGGAGTGCCCAGAAACCCTGAGAATACCCCTTGGAGGCATGTTTGCTTG
TGCGAGTCTTGTATGTTGCCCGCTGTCTAAGTGTCTAAGTGTGGCACCAC
TGAATTTGTGTCTTGCCTTTTCAGCTCTGAGATTGTAGGTTTGAGCCCCA
CCTTGTGTCTTGGTTTTTCAATTCCGACATTGTGCCTCCTACCTGGGTTC
CCAGTTCTGTTATTCTGTATTTTGGCAGTTGCCATTGCGCACCATGAGGA
CTTTACTGGCTGCGCCAGACAGACGTCCTAATGCCCTGCAAGTTGCTACC
TTGGAAGATATTCTATGCTTGCCATTTTCTGCTATATAGATTCCCCCCTT
GTTACTATTGCCTCCCATGTCCATTACTATCCTCCCCCTACGAATCCTTG
TTTGCACTGTCCTGCCCATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_h24.b1 MSMg01no076_h24.b1 CHROMAT_FILE:
MSMg01no076_h24.b1 PHD_FILE: MSMg01no076_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:29 2005
         (283 letters)



>mm_chr9_76146973_76147655
          Length = 683

 Score =  445 bits (230), Expect = e-129
 Identities = 258/268 (96%), Gaps = 2/268 (0%)
 Strand = Plus / Plus

                                                                       
Query: 14  gtgtgtgcctgtgtgtgtgtgtgtgtgtgtgtgcgcgcgcgcgcgcgtgtgtgtgaatat 73
           |||||||  |||||||||||||||||||||||| |||| |||||| ||||||||||||||
Sbjct: 216 gtgtgtg--tgtgtgtgtgtgtgtgtgtgtgtgtgcgcacgcgcgtgtgtgtgtgaatat 273

                                                                       
Query: 74  atactcaggatatctatgttctctatctaagattggtcatcctctgtgatttactttaat 133
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 atactcaggatatctatgttctctatctaagattggtcatcctctgtgatttactttaat 333

                                                                       
Query: 134 tatctcatctctggcctcctcacgatgtttctgacttctcaaggtaatgaggatatattt 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tatctcatctctggcctcctcacgatgtttctgacttctcaaggtaatgaggatatattt 393

                                                                       
Query: 194 ttaagagctgatgcttctattatcaagaaaactctaaacaacacgctctctgcatagcgg 253
           ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 394 ttaagagttgatgcttctattatcaagaaaactctaaacaacaggctctctgcatagtgg 453

                                       
Query: 254 tttcatgaacgacgaatgaataatttta 281
           ||||||||| || |||||||||||||||
Sbjct: 454 tttcatgaaggatgaatgaataatttta 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)