BAC Information

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BAC

Clone NameMSMg01-076P08
Chromosome9 (Build37)
Map Location 116,738,950 - 116,739,063
singlet/doubletsinglet
Overlap geneRbms3
Upstream geneGadl1, EG668829, Tgfbr2, LOC100043817, LOC100043819, D730003K21Rik
Downstream geneLOC665840, LOC100039650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076P08.T7 (MSMg01no076_p08.b1)MSMg01-076P08.TJ (MSMg01no076_p08.g1)
ACCAG299410AG299411
length694853
length of high quality
(start - end)
114 (75 - 188)---
definitionCHROMAT_FILE: MSMg01no076_p08.b1 PHD_FILE: MSMg01no076_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:07 2005CHROMAT_FILE: MSMg01no076_p08.g1 PHD_FILE: MSMg01no076_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTTCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGAT
CCGCGGAATTCATTTTTTCCTCTGCTTCCTTTTTAGTTAGTGTAGTGTCA
TAACACTGGAGCATTTAAATGATCGAAAGGTGGAAAGGGGTGCTCATGTA
TAGAGGGAATGTGGCTCGCATCTAGGTCAAGCTGGTAGGGAAGCAGTCAG
GTCTTAGCAGGTCTGTAGGTCACTGACCATGCACAATTCTCCCATAATCA
GCACTTTGTACAACTGAGAACAGAAGCTTCAGGATTGTAATTACCAGTCC
AGACGATGAGATCTGAGTCATGTCTCTGTCCCTGGGCTTATACAGAACAT
TCTGAACTTCCCAGAAGGTCTCTAAGATCATGACATGGCCGGAGTTTTTC
TGGTAAAGAACAAAGACCTTCCACCTCATTATGTTCTCCACAGTTACTCT
ACTGTGTTTTTGCCCATCCCTGTCCACGAATATTCTCGGCTGCAAAGCTG
TCCTTTACACCCTACGAAATCGTGCGTTCTGCCTCCTGCCTAGTCTGCTT
AGCGTACTGCTCTTGCGACCTTCTTCTTCGAATTGTTCCTCTATTACGCC
CCTCGTTCCCATCTTACCCCCCTCTATTGTCTCATACTTGCTCTTTGCCC
CCCCTATCCCAATTTTCCCTTACACTCATATTCTGCCGTCCTGG
ATATTGACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTCTGATAAAAAA
AAATTGTATTCTCTCACACTCTTTGTTCTACGCGCATCCTCTTCTGTGTA
CAGTACGGTGTGTCGCCTATATGTACCCCCCTACCCCCCCCCCACCTCGC
TTCCTACCCTTTCTTCCATACTTCCGCATCTAATCCCCTCTACTCACTAT
GTGTCGTTAATTATTATAACTACCCTCTCTCAATACTAAATTATCATCCC
TCTCATCCTCTCCCCCCCCCACTCCTGCATTCGTACTTTCCCCCCACTCG
TTCCCTACCCCCACCCCACATATTCTTTATTCGTTCCACTTCCTATCTTA
CATACATTCGACTCCCCTATCTCCTCTTATTACTTCTCCAACACCCTCTT
TTTTACCCCATGACCACCCTCCCTTTTGCGCTTTTATTCTCCGAGCGATC
CCCCTGTGAATTCACGTATACTTTCCTACCTCATAATCATTCCCCCTCGC
GGCTATTACTTCCGTCCATATACTTCCCCATTTATTCCACTTTCCACCCT
CACTTTATACCACTTATTCTATCCGCCTCTCACTTTTCCANTTTTACCTC
CCATTTATCCTCACCCCTTCCCTCCTCCTTACACCCCCAACACTCCTACT
CCCTTTCCTACTCTTCGCCTTTCCCAGTACCGGTTTCTCGTTCTGTTTTA
CTAAACCCACCCTTCACTTCCATTTTTTGACACCGTTTTCCTTCTGCTTG
GTTATTCCTGCCTTGCCTCTACTTTTACACCCGCGCGTTCACTCCGCGAT
CCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_p08.b1 MSMg01no076_p08.b1 CHROMAT_FILE:
MSMg01no076_p08.b1 PHD_FILE: MSMg01no076_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:07 2005
         (114 letters)



>mm_chr9_116738750_116739263
          Length = 514

 Score =  182 bits (94), Expect = 6e-51
 Identities = 109/114 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcctttttagttagtgtagtgtcataacactggagcatttaaatgatcgaaaggtgga 60
           |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 201 cttcttttttagttagtgtagtgtcagaacactggagcatttaaatgatcgaaaggggga 260

                                                                 
Query: 61  aaggggtgctcatgtatagagggaatgtggctcgcatctaggtcaagctggtag 114
           |||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 261 aaggggtgctcatgtagagagggaatgtggcttgcatctaggtcaagctggtag 314


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 114
Length of database: 514
Length adjustment: 8
Effective length of query: 106
Effective length of database: 506
Effective search space:    53636
Effective search space used:    53636
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)