BAC Information

Click to search

BAC

Clone NameMSMg01-078B17
Chromosome9 (Build37)
Map Location 90,264,660 - 90,265,076
singlet/doubletsinglet
Overlap genenone
Upstream geneAF529169, Tmed3, B230218L05Rik, Rasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b
Downstream geneLOC100039777, LOC100039925, EG434428, LOC621576, Zic1, Zic4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078B17.T7 (MSMg01no078_b17.b1)MSMg01-078B17.TJ (MSMg01no078_b17.g1)
ACCAG299521AG299522
length680681
length of high quality
(start - end)
530 (44 - 573)417 (72 - 488)
definitionCHROMAT_FILE: MSMg01no078_b17.b1 PHD_FILE: MSMg01no078_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:19 2005CHROMAT_FILE: MSMg01no078_b17.g1 PHD_FILE: MSMg01no078_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGA
ATTCTTTGCTGACCCTCTCTCAGTAAAGATGTGAGACCATGAAGCACTGC
AAAACTAGTTATGCCAGCAAGCCAAGTCCCTCTTGCAGTCCATTGAGTCC
TATTTATACTCCCTCCACACACTGTGTGACCTACTCAGGTATTGCCTCAT
GATATGTCTTGCCTCAGCACATGAGTCAGTCTTAGCAAAACTCCATGTGA
GTCTATATCACCTGGTATCACTCTGCCAATCGTCCTGAGTCTATGGAAAT
GGTAAGAAGCTGCCAGCACACCACCAGACGGTTTTTGCTGTATTTCTCTG
GCATCACGACAAATGAAGTTCTACTACACAATGAAAAGCGGACCAAAATA
TGTGTGTCTTTAGCAAAGATTCCTTCATTACGTGTCCTTACATATGCTTG
CTTTAGCAAAACATCCTTTCACCTGTGTCTGACTCAGGGAATCACCTCTT
CATGTCCTTGACCATCCAAAACAACTGACTTTCCAAAGAAGCCTTAAGTT
TCATTCTGTGGTTGCACAGAAGTTGTAGGAGTGGCCAACCAATGACTGAT
TTGAGATAAATCTCACTCCACAAGAAGTAACTCATACCTGACACATAATA
TGGATACCGTATTACATGTATATGTGTGTG
NCCATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGGATGCTGGAGTCTTCCTTTAGTGTCCA
TTTCAGCTGGCACCTAATGTTGCTCACATAATCACAAACCACTCTGTCAT
AATTCAGACCAGCTGGATAAAATGAGACAAAAGGAAATTTGGCAGCAATG
GAGGGGATGGTAATTTAAGAGGCTTTTTAATTATGTTTTCTGTGTTTTTC
AATCAACAATACTTTAAAGCCTTTAGTTTTTCTTATAATAGGATTTCTGC
ATTGTTGTTGGGTTGGTTGTTAAGATATTAGCATGAAGTTTTCCACCAAA
AATTTTAAACACTAAACAAGGGAGCAAATCTAGGCAACCAAAAAAGAGTT
GAAAGGAAGCATTTATAGTAATCATCACTTCTGTAAGAAATTTTGTATTT
AAATTACATAGGTAAATTGCTTTTACTCTTTCAAAAAGGTGCAGTTTTGG
TCTGAATAGCCAATGTTTACCAGATATAACCCTCAATACTTCCAGAGATG
TGACATTATGTTCACCATTTTTTCCACAATCATGACTGTGTACCAGAGTT
TGGAAGACCGCTTAAGACAAACAACTACTAAGCAAACTGTTAATGGAGTC
CGAGAACCAAGCAAATAATCCAGCGGAATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_b17.g1 MSMg01no078_b17.g1 CHROMAT_FILE:
MSMg01no078_b17.g1 PHD_FILE: MSMg01no078_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:19 2005
         (417 letters)



>mm_chr9_90264460_90265276
          Length = 817

 Score =  806 bits (417), Expect = 0.0
 Identities = 417/417 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggatgctggagtcttcctttagtgtccatttcagctggcacctaatgttgctcacataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggatgctggagtcttcctttagtgtccatttcagctggcacctaatgttgctcacataa 260

                                                                       
Query: 61  tcacaaaccactctgtcataattcagaccagctggataaaatgagacaaaaggaaatttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcacaaaccactctgtcataattcagaccagctggataaaatgagacaaaaggaaatttg 320

                                                                       
Query: 121 gcagcaatggaggggatggtaatttaagaggctttttaattatgttttctgtgtttttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcagcaatggaggggatggtaatttaagaggctttttaattatgttttctgtgtttttca 380

                                                                       
Query: 181 atcaacaatactttaaagcctttagtttttcttataataggatttctgcattgttgttgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcaacaatactttaaagcctttagtttttcttataataggatttctgcattgttgttgg 440

                                                                       
Query: 241 gttggttgttaagatattagcatgaagttttccaccaaaaattttaaacactaaacaagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttggttgttaagatattagcatgaagttttccaccaaaaattttaaacactaaacaagg 500

                                                                       
Query: 301 gagcaaatctaggcaaccaaaaaagagttgaaaggaagcatttatagtaatcatcacttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagcaaatctaggcaaccaaaaaagagttgaaaggaagcatttatagtaatcatcacttc 560

                                                                    
Query: 361 tgtaagaaattttgtatttaaattacataggtaaattgcttttactctttcaaaaag 417
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtaagaaattttgtatttaaattacataggtaaattgcttttactctttcaaaaag 617


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)