BAC Information

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BAC

Clone NameMSMg01-078C02
Chromosome9 (Build37)
Map Location 85,577,760 - 85,578,079
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666672, BC023892
Downstream geneIbtk, 4933431K14Rik, EG434426, 9330154J02Rik, Tpbg, 2610018I03Rik, Pgm3, Rwdd2, Mod1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078C02.T7 (MSMg01no078_c02.b1)MSMg01-078C02.TJ (MSMg01no078_c02.g1)
ACCAG299539AG299540
length712732
length of high quality
(start - end)
453 (46 - 498)323 (72 - 394)
definitionCHROMAT_FILE: MSMg01no078_c02.b1 PHD_FILE: MSMg01no078_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:21 2005CHROMAT_FILE: MSMg01no078_c02.g1 PHD_FILE: MSMg01no078_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGG
AATTCTTAGACAATGCCTGGATCTGGAGGATATCAGCCTAAGTGAGGTAA
CCCAATCACAAAAGAACACACATGATATGCACTCACTGATAAGTGGATAT
TAGCTCAGAATCTCAGAATACCCAATATACAATTTGCAAAATACATGAAA
CTCAAAAGGAAGACCAAAGTGTGCATACTTCGATCCTTTTTAGAAAGGGG
AACAAAATACCCATGGAAGAAGTTATAGAGACAAAGTTCTGAGCAGAGAC
TGAAGAAATGATCATCCAGAGACTGCCCCACCTGGGGATACATCACATAA
ACAACCACAAACCCAGACACTATTGCAGATGCCAACAAGAGCTTGCTGAC
AGGAACCTGATATAGCTGTCTCCTGAGAGGCTCTGCCAGTGCCTGACAAA
TACAGAAGTGGAGGCTCACAGTCATCCATTGGACAGAGCACAAGGGTCTC
CAATGAAGGAGCTAAAGAAAGGACCCCAGGAGCTGAAGGGGCTTGCAGGC
CCCTAGGAGGACCTTAATATGAACTATCCAGAACCCCCCAGAGCTCCCTG
TGAACTAAAGCACCAATCTAATAAAACACATGGTGGACCTCCTTGGCTCC
AGATGCCTACGTACCATAAGATGGCCTCGATCATCCATGGTGAGAAAGGC
CCTTGCTCCTGT
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCATTATTTTTCTTAATAGCTGTGTAGATA
TACCCCGTTTCATTATGCATCCATGTGTCGACGAACATTGCGTAGGGTTT
TCTGACAGCTTGTAGAAAGCTTCTAGAGTTCCACTGTCTACTGTCCCATG
AGGACACCAAGAGAGAAATGCCAACATTTTCAGTTTCTTAATGAAATCCA
CTTGACTGGCCAGTTGATCACTTTAAGGCAGTGGTTTTCAACCATAAAAT
TCCACTGCTACTTCGTTACTAATTTTGCTACTGTTATTAATTATAAGTTA
ACTTTCTGTGTTTTCTGATGGCCTCCCCCCCTCACCCCCCCCCACCCCTC
GTGAAAGGCTTGTCCCATCTCCACTCTCGGTTTTGACAACTCCCGCCTGA
TAACCCTAATATTTCCTCTGATCTCTGCGCCCCTCACTCCTGTATTTCAA
TCTGCTGGTCTCTTACTCCCTGTCAAATCCTCTTTCCCATCACCCTTACC
TCGTATTTCGCCTTCTCTTTGTCTCTTGTTTAATATCTTATCTCTCTTAT
TTCCTCACTTATACTAAATAATCTTCTCCCGCCCTATTTTTTTACTTTTC
CCTATCTTTTATATCCTCACCTCTTCCCTTTTTCTTATTTGCCTTGTGGT
CTGTTCTCTCCTTTCTTGCATTTCACTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_c02.g1 MSMg01no078_c02.g1 CHROMAT_FILE:
MSMg01no078_c02.g1 PHD_FILE: MSMg01no078_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:21 2005
         (323 letters)



>mm_chr9_85577671_85578393
          Length = 723

 Score =  601 bits (311), Expect = e-176
 Identities = 319/323 (98%), Gaps = 4/323 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattatttttcttaatagctgtgtagatataccccgtttcattatgcatccatgtgtcga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 cattatttttcttaatagctgtgtagatataccccgtttcattatgcatccatgtgtcga 350

                                                                       
Query: 61  cgaacattgcgtagggttttctgacagcttgtagaaagcttctagagttccactgtctac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 cgaacattgcgtagggttttctgacagcttgtagaaagcttctagagttccactgtctac 290

                                                                       
Query: 121 tgtcccatgaggacaccaagagagaaatgccaacattttcagtttcttaatgaaatccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tgtcccatgaggacaccaagagagaaatgccaacattttcagtttcttaatgaaatccac 230

                                                                       
Query: 181 ttgactggccagttgatcactttaaggcagtggttttcaaccataaaattccactgctac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 ttgactggccagttgatcactttaaggcagtggttttcaaccataaaattccactgctac 170

                                                                       
Query: 241 ttcgttactaattttgctactgttattaattataagttaactttctgtgttttctgatgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 ttcgttactaattttgctactgttattaattataagttaactttctgtgttttctgatgg 110

                                  
Query: 301 cct-ccccccctcaccccccccc 322
           ||| |||||||   |||||||||
Sbjct: 109 ccttccccccc---ccccccccc 90


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)