BAC Information

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BAC

Clone NameMSMg01-078D23
Chromosome9 (Build37)
Map Location 123,026,706 - 123,027,083
singlet/doubletsinglet
Overlap geneExosc7
Upstream geneSnrk, Tmem16k, Abhd5, LOC100040193, LOC100040204, 9530059O14Rik, LOC666218, LOC671232, D9Ertd402e, Zfp445, LOC623874, Zfp167, EG666257, Zfp660, Zfp105, 1110059G10Rik, Kif15, Tmem42, Tgm4, Zdhhc3
Downstream geneClec3b, Cdcp1, Tmem158, Scp2-ps2, Lars2, Limd1, Sacm1l, Slc6a20, Xtrp3s1, Ccr9, LOC100043855, Lztfl1, Fyco1, Cxcr6, Xcr1, LOC100040443, LOC100043858, LOC671399, Ccr1, Ccr1l1, Ccr3, Ccr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078D23.T7 (MSMg01no078_d23.b1)MSMg01-078D23.TJ (MSMg01no078_d23.g1)
ACCAG299628AG299629
length686689
length of high quality
(start - end)
453 (72 - 524)519 (70 - 588)
definitionCHROMAT_FILE: MSMg01no078_d23.b1 PHD_FILE: MSMg01no078_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:31 2005CHROMAT_FILE: MSMg01no078_d23.g1 PHD_FILE: MSMg01no078_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAAATGCGCGGAAT
TCTAGAACATCTCCGCAAACAGAACTAGAAAGAATATATACCAACCATCA
AGTCTTCATTTAGTTCCCCATCTATCAAGAAGCCAGGAGTTCAAATCAAT
AGCTCACTTCCCACTTCATGTTCACAGTTCATTCCAGGCTTTTTCTTATT
TGTAACGTTTTTCTCTGAGTCCCAGTACCAAATCTCTAGAGATGGAGGTA
GGGAGAAACCTGGCTGTCATTATCTATCCCATATTTCCATATACCTTTTC
CCTGAGTATATACATTGTCTCATGGCTGCTAACCATTCTCCCGGGAGAAA
TAAACTTTGCAGTAGAGCACAGTTAGATACAATGTCTCGGTTTTCTTCTC
CTCACCCTTTCTTCCCTTCCCTATAGTCACAGTATTTATTTGTAAACCCA
ACTCCTTTGCAACATTTATATTTCTGTTCCACTGAATCCTGGTTACTTTT
AATTTCTTATTTACTTTCCCAGGGGTATGGAATGTCCCTGTGACTCCTCC
AGTCAAATAGCTTTGAGTAACTACCTCTTCCCTTTATCTAATTATGTTCC
TTTCCATATCCCCCCTCTTCTTACTTCTTTCCCATCTAACGCCAACAATT
GGGTTTTCCTTATTGATATCCCCTTAACCTTGTATT
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATATTTTTCATAAACAGTCAAATCTCATACA
AGAGATTTCATACTGGAGATAAAACTCATAACTGTGAAAAGTCCTTCCAA
GCAAAGACAAATTTCTTACAACATCAGAGACTTTATACAGGAGAGAAATT
CTATCAATGCAAGGACTGTGGCAAAGTCTTTTGTCAGAACCCACTTATTA
AAGATCAATGATGAATTCATACTTAAGAAGAGCCATATAAATGTCGGGAA
TGTGACAAAGTCCTTAATGAATGTACCTCACTCAGTAAACATCAGAGAAT
TCACACAGGAGTGAGACCCTACACATGCAATGAATGTGGTAAAACCTTCA
TTCAGAGCATTTGCCTTGATCAGCATCAGAAACATCACACTGAAGAAAAA
CTGTATAAATGCAATGCATGTGTTAAGAGTTTAACCAGAATACCAGTCTC
ACTCAGCATATGAGAATTCATACTGGAGAAAAGCCTTATTAATGTAAGGA
ATGTGGAAATCCTTTTGCTCATAGCTCATCTCTTACTGAACACCATAGGA
CTCACACTGGTGTGAAGCTCTCTAACTGTAGACAAACTGAGAAAACCTTC
CAATAATATTGCTCTTGTAGGAACCCCGATAGGTGGACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_d23.b1 MSMg01no078_d23.b1 CHROMAT_FILE:
MSMg01no078_d23.b1 PHD_FILE: MSMg01no078_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:31 2005
         (453 letters)



>mm_chr9_123026706_123027558
          Length = 853

 Score =  700 bits (362), Expect = 0.0
 Identities = 374/378 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaactagaaagaatatataccaaccatcaagtcttcatttagttccccatctatcaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gaactagaaagaatatataccaaccatcaagtcttcatttagttccccatctatcaagaa 319

                                                                       
Query: 61  gccaggagttcaaatcaatagctcacttcccacttcatgttcacagttcattccaggctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gccaggagttcaaatcaatagctcacttcccacttcatgttcacagttcattccaggctt 259

                                                                       
Query: 121 tttcttatttgtaacgtttttctctgagtcccagtaccaaatctctagagatggaggtag 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tttcttatttgtaacatttttctctgagtcccagtaccaaatctctagagatggaggtag 199

                                                                       
Query: 181 ggagaaacctggctgtcattatctatcccatatttccatataccttttccctgagtatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ggagaaacctggctgtcattatctatcccatatttccatataccttttccctgagtatat 139

                                                                       
Query: 241 acattgtctcatggctgctaaccattctcccgggagaaataaactttgcagtagagcaca 300
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 138 acattgtctcagggctgctaaccattctcccgggagaaataaactttgcagtagagtaca 79

                                                                       
Query: 301 gttagatacaatgtctcggttttcttctcctcaccctttcttcccttccctatagtcaca 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 78  gttagatacaatgtctcggttttcttctcctcacccttccttcccttccctatagtcaca 19

                             
Query: 361 gtatttatttgtaaaccc 378
           ||||||||||||||||||
Sbjct: 18  gtatttatttgtaaaccc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)