BAC Information

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BAC

Clone NameMSMg01-078L02
Chromosome9 (Build37)
Map Location 75,712,337 - 75,900,391
singlet/doubletdoublet
Overlap geneBmp5, EG620071, Hmgcll1
Upstream geneOnecut1, BC031353, Arpp19, LOC100040812, Myo5a, LOC677501, Myo5c, Gnb5, Bcl2l10, LOC384954, Mapk6, Leo1, EG666190, LOC100042070, Tmod3, Tmod2, Lysmd2, Scg3, LOC100042107
Downstream geneGfral, Hcrtr2, C530008M07Rik, Tinag
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078L02.T7 (MSMg01no078_l02.b1)MSMg01-078L02.TJ (MSMg01no078_l02.g1)
ACCAG299967AG299968
length688680
length of high quality
(start - end)
327 (67 - 393)284 (73 - 356)
definitionCHROMAT_FILE: MSMg01no078_l02.b1 PHD_FILE: MSMg01no078_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:06 2005CHROMAT_FILE: MSMg01no078_l02.g1 PHD_FILE: MSMg01no078_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,712,337 - 75,712,663)(75,900,108 - 75,900,391)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXCTATTTCAAGAGAGACCGCGGA
ATTCAGTATTATCCATTATATCTTGACTAAAGTGCTTAAAATGCAATATG
AGCATAATTTAGTATATAGGGTAGGCAGAAAATGCTATACCTTTAAAACA
ATTGATTTCCAAAAAGGGCAAAATCCAAGTATATTTGAGTTACTGAATCC
ATGGCTTATGTGTACTAGAATCAAACTTAGCACAGGCTGAACATGAGATC
AAGCAGACATGGCAATGTAAAACAAGGGACTGATTGGCTTTCTGTGTAGT
CGGCAGTAACGGGTGTTGTATGTCTTGCTTCAAAGACAGGGGACTTAATT
TGTTCATATTCCATCACAGGTGTTTTGGTTTATTCAGTCAGCAGCTATAT
GTTTACAGGAAGGCCCACCGAATTTTATTCTAATGTCTTATAGGGATATC
AACACTTAGACTCTGATAAATTCTTAAATGAATGCTTTTCAGATTGCATA
TCCTCTAGGGAAATGAAATGCCCTGACTTATAATCACTTACCACTGCATC
AGCTCCGACTCTGCTTTCCGTCAGAATACCCTCATAAACCCTGTTTTGAA
AGAATCATCGAAGCTTGACTTTATAGCTCCTTTTCCCCAGAATATACCTC
CTATCAATATTACACTAGGCTGTTTTATCATTTACTTT
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGATTCTGGAGTCTCTGGTCCTATAG
ACCTAGTTCAGAAGAAGTATTAGAAGTGTTAGTAAGATATTAGATGATTA
GTAATTAATAGGAATATGTATTAATAAGTGTACTAGAAGATGTAAATACG
CTTAATTAAAAGGAAAACATCTAAATAAGAAAAATTAGGCTTTCTAAATT
CCATATGAATTTTAAATGAGATGTAAGCTATATCTGTCATACTACATAAG
CATCATAACTGGCTATTTCTGTGCTGAATGTAAATAATTCATCATCATGT
CTTCAAATAAGGAGATAACCTAAACTTATACATTCAGGACCTGAGCTTCC
AACTATTTGGTTTTTTGCCAAATTACGTGCTCTCAACCTATTTATACCCT
GATCCTGTCCTCTTGAGAGAAACAGCTACGTTTTCAATAATTTCTTGAAT
TTCCTATATTGATTCTTTGAAGTTATGACTTCATCCCATTCATCCCGTTC
CTTCCTGAATCTTTATTTTCTCTTGTCCATCCTTTTCTCAACTCTCTTTG
TATATGTATCTCTTCTTGGCCCTCAATTCTTATCTAACTTTCATTTTGCC
GTTCCTTCCACCCCGATATTTTCATTCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_l02.b1 MSMg01no078_l02.b1 CHROMAT_FILE:
MSMg01no078_l02.b1 PHD_FILE: MSMg01no078_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:06 2005
         (327 letters)



>mm_chr9_75712137_75712863
          Length = 727

 Score =  594 bits (307), Expect = e-174
 Identities = 322/327 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatatcttgactaaagtgcttaaaatgcaatatgagcataatttagtatatagggtaggc 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatatcttgactaaagtgcttagaatgcaatatgagcataatttagtatatagggtaggc 260

                                                                       
Query: 61  agaaaatgctatacctttaaaacaattgatttccaaaaagggcaaaatccaagtatattt 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaaatgctatacctttaaaataattgatttccaaaaagggcaaaatccaagtatattt 320

                                                                       
Query: 121 gagttactgaatccatggcttatgtgtactagaatcaaacttagcacaggctgaacatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagttactgaatccatggcttatgtgtactagaatcaaacttagcacaggctgaacatga 380

                                                                       
Query: 181 gatcaagcagacatggcaatgtaaaacaagggactgattggctttctgtgtagtcggcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatcaagcagacatggcaatgtaaaacaagggactgattggctttctgtgtagtcggcag 440

                                                                       
Query: 241 taacgggtgttgtatgtcttgcttcaaagacaggggacttaatttgttcatattccatca 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgacgggtgttgtatgtcttgcttcaaagacaggggacttaatttgttcatattccatca 500

                                      
Query: 301 caggtgttttggtttattcagtcagca 327
           |||||||||||| ||| ||||||||||
Sbjct: 501 caggtgttttgggttagtcagtcagca 527


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no078_l02.g1 MSMg01no078_l02.g1 CHROMAT_FILE:
MSMg01no078_l02.g1 PHD_FILE: MSMg01no078_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:06 2005
         (284 letters)



>mm_chr9_75899908_75900591
          Length = 684

 Score =  526 bits (272), Expect = e-154
 Identities = 281/284 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgattctggagtctctggtcctatagacctagttcagaagaagtattagaagtgttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tttgattctggagtctctggtcctatagacctagttcagaagaagtattagaagtgttag 425

                                                                       
Query: 61  taagatattagatgattagtaattaataggaatatgtattaataagtgtactagaagatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 taagatattagatgattagtaattaataggaatatgtattaataagtgtactagaagatg 365

                                                                       
Query: 121 taaatacgcttaattaaaaggaaaacatctaaataagaaaaattaggctttctaaattcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 taaatacgcttaattaaaaggaaaacatctaaataagaaaaattaggctttctaaattcc 305

                                                                       
Query: 181 atatgaattttaaatgagatgtaagctatatctgtcatactacataagcatcataactgg 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 304 atatgaattttaaatgagatgtaagctatatctgtcgtactacataagcatcataactgg 245

                                                       
Query: 241 ctatttctgtgctgaatgtaaataattcatcatcatgtcttcaa 284
            ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 244 ttatttctgtgctgaatgtaaataatgcatcatcatgtcttcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)