Query= MSMg01no078_l23.b1 MSMg01no078_l23.b1 CHROMAT_FILE:
MSMg01no078_l23.b1 PHD_FILE: MSMg01no078_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:10 2005
(548 letters)
>mm_chr9_92984649_92985596
Length = 948
Score = 1044 bits (540), Expect = 0.0
Identities = 546/548 (99%)
Strand = Plus / Minus
Query: 1 ccagatgtttgatacgttggataaagtgtaacattgaaataatctattattagcaaatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 ccagatgtttgatacgttggataaagtgtaacattgaaataatctattattagcaaatct 689
Query: 61 ctaacacatagagaaaaacaattatttcagttcgtaaattgtatagtagaacacggggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 ctaacacatagagaaaaacaattatttcagttcgtaaattgtatagtagaacacggggaa 629
Query: 121 attagtatatttagtagtaatcatgcttataaagtaacaaatgttttatgtttgaatatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 attagtatatttagtagtaatcatgcttataaagtaacaaatgttttatgtttgaatatg 569
Query: 181 aaacagtatctgcacgtgtgtgtttatttatgtgtgaatgtcaaattatagcgatgattc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 568 aaacagtatctgcacgtgtgtgtttatttatgtgtgaatgtcaaattatagcaatgattc 509
Query: 241 atcactcagaataaaatattgaaagtggtgttgaattgttaatgatctgtaatattggaa 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 atcactcagaaaaaaatattgaaagtggtgttgaattgttaatgatctgtaatattggaa 449
Query: 301 cataaaagatataaatcatgtattttgcaacatcttgaatttacacatattggaaattca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cataaaagatataaatcatgtattttgcaacatcttgaatttacacatattggaaattca 389
Query: 361 taacaataaaaaaatgaagggccatctagaaattctctgacatcagcacaaaagaacatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 taacaataaaaaaatgaagggccatctagaaattctctgacatcagcacaaaagaacatt 329
Query: 421 tttttctgcagagatcacttttcatctatctgctcataagtacactatatccactaacac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tttttctgcagagatcacttttcatctatctgctcataagtacactatatccactaacac 269
Query: 481 ttgtgaaaaaggcagatatcaggaacaactgctattttctgctctcaataacatcacttc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ttgtgaaaaaggcagatatcaggaacaactgctattttctgctctcaataacatcacttc 209
Query: 541 tatatgac 548
||||||||
Sbjct: 208 tatatgac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no078_l23.g1 MSMg01no078_l23.g1 CHROMAT_FILE:
MSMg01no078_l23.g1 PHD_FILE: MSMg01no078_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:10 2005
(522 letters)
>mm_chr9_92897398_92898319
Length = 922
Score = 975 bits (504), Expect = 0.0
Identities = 521/534 (97%), Gaps = 12/534 (2%)
Strand = Plus / Plus
Query: 1 actcatcccacctagaggtgcaccaggatatggggtctctgtggcccccagagatggttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 actcatcccacctagaggtgcaccaggatatggggtctctgtggcccccagagatggttg 248
Query: 61 tttgttttatgtttttgactggagcatcagtagtgatgaagttcaccagtactcattgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttgttttatgtttttgactggagcatcagtagtgatgaagttcaccagtactcattgcc 308
Query: 121 atagttcgtttg------------accaaaagcttgaataagcttgaatggctcccttga 168
|||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 309 atagttcgtttggtcttggaaaagaccaaaagcttgaataagcttgaatggctcccttga 368
Query: 169 aagatcgaagtgaaaacctcctttgttataagatttgatagcatttttctctcatatggg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aagatcgaagtgaaaacctcctttgttataagatttgatagcatttttctctcatatggg 428
Query: 229 aggagctctttctctttgggatttgggaaactgttaattatttgtttttcctctttaagg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aggagctctttctctttgggatttgggaaactgttaattatttgtttttcctctttaagg 488
Query: 289 gaggtaaatgtgggatcctctgcatggaacatatagatcctttcaaagcctcatctgcta 348
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 489 gaggtaaatgtgggatcctctgcatggaacatataggtcctttcaaagcctcatctgcta 548
Query: 349 gtgtttccttggccaccacagaatgtcctttctgctatcctgtacaatggactaactatt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gtgtttccttggccaccacagaatgtcctttctgctatcctgtacaatggactaactatt 608
Query: 409 ttttcttcaggtaacactaactcatctaaaagtgcttagatggttatctccttaggtacc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ttttcttcaggtaacactaactcatctaaaagtgcttagatggttatctccttaggtacc 668
Query: 469 aggtcttggccttccctatagtgatactcagctctgtccagaggttcctgaaca 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 aggtcttggccttccctatagtgatactcagctctgtccagaggttcctgaaca 722
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
