Query= MSMg01no079_k02.b1 MSMg01no079_k02.b1 CHROMAT_FILE:
MSMg01no079_k02.b1 PHD_FILE: MSMg01no079_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:18 2005
(528 letters)
>mm_chr9_78240807_78241731
Length = 925
Score = 990 bits (512), Expect = 0.0
Identities = 520/524 (99%), Gaps = 3/524 (0%)
Strand = Plus / Plus
Query: 5 gaattccatgctaacagcatggaaatgttttcaattaaatcattgcaggaaaaaaaaaat 64
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatgctaaaagcatggaaatgttttcaattaaatcattgcaggaaaaaaaa--- 261
Query: 65 tccctaaatgagggaaagtgacaccaatctagataaagagccatagaacaccaacagaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tccctaaatgagggaaagtgacaccaatctagataaagagccatagaacaccaacagaaa 321
Query: 125 agatgagagcagaaaagaatgtcccatcaggctatctttagtaaagtgacatggttcagt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agatgagagcagaaaagaatgtcccatcaggctatctttagtaaagtgacatggttcagt 381
Query: 185 ggaccaaagcacttcccacccatgcttgacacctgagtttgatccccagaacctacaggg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ggaccaaagcacttcccacccatgcttgacacctgagtttgatccccagaacctacaggg 441
Query: 245 aaggacactagttattcctaaaagttgttctctgatctccacatgcccactaggacatgc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aaggacactagttattcctaaaagttgttctctgatctccacatgcccactaggacatgc 501
Query: 305 atatagccacacacacataccatatgcccagaattttacactgacacatacacacacaca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 atatagccacacacacataccatatgcccagaattttacactgacacatacacacacaca 561
Query: 365 tccctcgatacaagaaagtcttctaatacatttcaatgtcctttcttgataaatattctg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tccctcgatacaagaaagtcttctaatacatttcaatgtcctttcttgataaatattctg 621
Query: 425 aaaaaaaaaaaaaaaccttgataaagggacaggagagacgcccagcactaagagcattac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aaaaaaaaaaaaaaaccttgataaagggacaggagagacgcccagcactaagagcattac 681
Query: 485 cctgcttgctcttcttgtggacagggcttaatagtcatgaatct 528
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 cctgcttgctcttcttgtggacagggcttaatagtcatgaatct 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 925
Length adjustment: 10
Effective length of query: 518
Effective length of database: 915
Effective search space: 473970
Effective search space used: 473970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_k02.g1 MSMg01no079_k02.g1 CHROMAT_FILE:
MSMg01no079_k02.g1 PHD_FILE: MSMg01no079_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:18 2005
(521 letters)
>mm_chr9_78381625_78382545
Length = 921
Score = 833 bits (431), Expect = 0.0
Identities = 464/479 (96%), Gaps = 9/479 (1%)
Strand = Plus / Minus
Query: 1 caacctttgaaaacttccatggaaaactttgttacccacccagcaaagaaatcccacaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 471 caacctttgaaaacttccatggaaaactttgttacccacccagcaaagaaatcccacgga 412
Query: 61 gatgagctgccaggtgaccttaaaaaccaggcctatgaaaacaatgtagacaaacaccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gatgagctgccaggtgaccttaaaaaccaggcctatgaaaacaatgtagacaaacaccaa 352
Query: 121 agtcagcagcttgctttagtccttgcatctttctccagactttggtcatctcttgaattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 agtcagcagcttgctttagtccttgcatctttctccagactttggtcatctcttgaattt 292
Query: 181 agcacctgttgcaaagcagattctctgacttgtcttaggaccacaccccacttttagaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 agcacctgttgcaaagcagattctctgacttgtcttaggaccacaccccacttttagaag 232
Query: 241 taaaaacatcccaaataggaagaaaagg-aaaaaacaaacaaacaaacaaacaaaaaaca 299
||||| |||||||||||||||||||||| ||||||||| |||||||||| | ||
Sbjct: 231 taaaaccatcccaaataggaagaaaaggaaaaaaacaa--aaacaaacaacc------ca 180
Query: 300 ccctgctgtcaaatttaaatttgagccaggtgagaggactggtggtggcttctacctgta 359
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 179 ccctgctgtcaaatttaaatttgagccaggtgagcggactggtggtggcttctacctcta 120
Query: 360 atcccagccggtgtgggcaagatgatcagcccagcatcaaccttagctatacaaccagtt 419
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 atcccagccggtgggggcaagatgatcagcccagcatcaaccttagctatacaaccagtt 60
Query: 420 caagaacagcctgggctacatcaaacccagaaaataaaaactgaataaatctgaatgca 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 caagaacagcctgggctacatcaaacccagaaaataaaaactgaataaatctgaatgca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
