BAC Information

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BAC

Clone NameMSMg01-079N20
Chromosome9 (Build37)
Map Location 46,889,244 - 46,889,775
singlet/doubletsinglet
Overlap genenone
Upstream geneBC033915, Apoa1, Apoc3, Apoa4, Apoa5, Zfp259, Bud13, 4931429L15Rik, LOC100042722, EG667890, 2900052N01Rik, D930036J05
Downstream geneCadm1, LOC100043303
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079N20.T7 (MSMg01no079_n20.b1)MSMg01-079N20.TJ (MSMg01no079_n20.g1)
ACCAG300844AG300845
length713715
length of high quality
(start - end)
529 (66 - 594)342 (68 - 409)
definitionCHROMAT_FILE: MSMg01no079_n20.b1 PHD_FILE: MSMg01no079_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:36 2005CHROMAT_FILE: MSMg01no079_n20.g1 PHD_FILE: MSMg01no079_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATTC
TAATGCTGATCCCAAGCAACCAGGAGACTCTTCCACAGGCAGCCATGAGA
AGGCTCTCTTCTCCATTGGGCAGAGACTAAAGAGAGGAGGCTCAAAGCCC
ATCCCCCATAATGACACACTTCCTCCAACAAGGCCACACCTACTCCAACA
AGGCCACACCTCCTAATAGTGCCACTCCTTGCGACAAATATTTTCAAACC
ACCATATTTGGAATACTTTATTTATAGGAAACGTACAAAGACAATAAGCA
CAGAGCTTATACCCTTTCTCCAGTATGTCCTAGATTGGTATTTTATTTAT
CTATGGCGGTTTTGTCAAAATAAATTAGGGGCTGGCTATCTGACCACCAG
ATAAGCGAACTAACTGAGTTTGAACAGGACCCAGTACAGTTCCCAGGACT
CACATCAGGCTGCTTAGAACTAACAGCGTCTAACTCCAGCTCCGGGATCT
AACACCCTCTTGTGGCCTCCTTGGGTACCTGCACCCAGAAGTGCGTATAC
CCCCATCACCACTTACAAATGTAACTCAAAATAAAATAAATCTTCTTTTA
AAGGAGAAAGCACATTGCTTAGAGAAGTGAGTATGGAAGCTGTGGTTTCC
TGCAGCTCTTGCCAGGCGATGAAGTCATGGACATTTCTCTGTCTTGAGAT
TCCATCGTGCACG
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGAACTCTTCAGCTGGGGAACGGTGGTAATGAA
GTGTTCCCGTAAAACAGACTGTTGAGAAGGATTCAACTGCGTGAATTCAG
AACTCCTCAGCTGGGGAACGGTGGTAATGAAGTGTTCCTGCAACACAGAC
TGTTGAGAAGGATTCAACTGCGTGAATTCAGAACTCTTCAGCTGGGGAAC
AGGGTACCCGTAAGTATAGCTTTACAAGGTAAGTTTGGCCTTGAACTTTC
TAACAAAATTCAAGACAGTCTATCAGAAGTAAAGTGGGAAATAGCTTTAC
AAGGTATGTTTGAACTTGAACTTTTTCTAGTGTTAGGAGCCCTTTTGTTC
CTTTTCACATGTTACCAAGCGGTTAAGGCAGGGCTGAAAATTCTGGATGA
AATTCAGGGCAATCTATCAGAAGTAAAGCGGGTAAAGAGAGTATGAGCAA
AGAGGAAATATGGTACACAAAATAAGTATACAGGCCTTTCCACGGGTCTT
GAACCTGAGGAAAAGTTTAGGTCAGGCAAGAATACCTGGGGAGAGATTAT
AAGGAAGGAAAAGAATAAAGATCAATCAGCGGAGGTTTCTAGGAGAAGGA
GCCTATACCTCTCACCAGGTGAGCTCACGGATCCCGTTCCTAATAATCTC
TGACTCATATTGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_n20.b1 MSMg01no079_n20.b1 CHROMAT_FILE:
MSMg01no079_n20.b1 PHD_FILE: MSMg01no079_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:36 2005
         (529 letters)



>mm_chr9_46889046_46889975
          Length = 930

 Score =  932 bits (482), Expect = 0.0
 Identities = 519/532 (97%), Gaps = 3/532 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcaaccaggagactct--tccacaggcagccatgagaaggctctcttctccattgggcag 58
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 gcaaccaggagactctcttccacaggcagccatgagaaggctctcttctccattgggcag 258

                                                                       
Query: 59  agactaaagagaggaggctcaaagcccatcccccataatgacacacttcctccaacaagg 118
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 agcctaaagagaggaggctcaaagcccatcccccataatgacacacttcctccaacaagg 318

                                                                       
Query: 119 ccacacctactccaacaaggccacacctcctaatagtgccactccttgcgacaaatattt 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ccacacctactccaacaaggccacacctcctaatagtgccactccttgcgacaaatattt 378

                                                                       
Query: 179 tcaaaccaccatatttggaatactttatttataggaaacgtacaaagacaataagcacag 238
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 379 tcaaaccaccatatttggaatacttgatttataggaaacgtacaaagacaataagcacag 438

                                                                       
Query: 239 agcttataccctttctccagtatgtcctagattggtattttatttatctatggcggtttt 298
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 439 agcttatgccctttctccagtatgtcctagattggtattttatttatctatggctgtttt 498

                                                                       
Query: 299 gtcaaaa-taaattaggggctggctatctgaccaccagataagcgaactaactgagtttg 357
           ||||||| |||||||||||||||  ||||||| ||||||||||||||||||||||| |||
Sbjct: 499 gtcaaaaataaattaggggctggagatctgactaccagataagcgaactaactgagcttg 558

                                                                       
Query: 358 aacaggacccagtacagttcccaggactcacatcaggctgcttagaactaacagcgtcta 417
            |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 559 tacaggacccagtacagttcccaggactcacataaggctgcttagaactaacagcgtcta 618

                                                                       
Query: 418 actccagctccgggatctaacaccctcttgtggcctccttgggtacctgcacccagaagt 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 actccagctccgggatctaacaccctcttgtggcctccttgggtacctgcacccagaagt 678

                                                               
Query: 478 gcgtatacccccatcaccacttacaaatgtaactcaaaataaaataaatctt 529
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gcgtatacccccatcaccacttacaaatgtaactcaaaataaaataaatctt 730


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 930
Length adjustment: 10
Effective length of query: 519
Effective length of database: 920
Effective search space:   477480
Effective search space used:   477480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)