BAC Information

Click to search

BAC

Clone NameMSMg01-080I07
Chromosome9 (Build37)
Map Location 89,388,051 - 89,388,198
singlet/doubletsinglet
Overlap genenone
Upstream gene2810026P18Rik, 4930422I07Rik, EG547109, LOC100039707, LOC100039721, Bcl2a1d, LOC100039674, EG666731, LOC100039741, Bcl2a1a, LOC100039689, EG666747, LOC100039714, 4930579C12Rik, Bcl2a1b, Mthfs
Downstream geneAF529169, Tmed3, B230218L05Rik, Rasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080I07.T7 (MSMg01no080_i07.b1)MSMg01-080I07.TJ (MSMg01no080_i07.g1)
ACCAG301335AG301336
length696731
length of high quality
(start - end)
427 (43 - 469)156 (72 - 227)
definitionCHROMAT_FILE: MSMg01no080_i07.b1 PHD_FILE: MSMg01no080_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:27 2005CHROMAT_FILE: MSMg01no080_i07.g1 PHD_FILE: MSMg01no080_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCACCTGACCAATACCGAATGGCAGAGAAGCACTTGAAAAAATGTTCA
ACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCA
CCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCACAT
GCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAG
TGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTTCTCAGAAA
ACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATAT
ATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTATGTTC
ATAGCAGCCTTATTTACAATAGCCAGAAGCTGGAAAGAACCTAGATGCCC
CTCAACAGAGGAATGGATACCGAAAATGTGGTACATCTACACAATGGAGT
ACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGG
ATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACCAAGAAA
CTCCCACAATATGTATTCACCGATAAGTGGATATTATCCCCTTACCTAGG
GATACCCAGCGACAAAAATCAAATTTGCTATATCGATGTAATTTCA
CTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGGGGTACGTCCTAGAAACAGGAAAGAGG
GTCACATTTTTTAAATGTAAAATCTAATTCATAAAGTTAAAACCTTAACG
ACTGCCATTCTTAACAAGCAACATTCAATCTTGCATGTATATGTAGATAT
TAAATGTACATACACATGCAAACAGAGAGGGGGGGGGAGAGAGAGGTAGA
GACAGAGAGATAATACCTTTTCTTCTTCCCCTTTTTTATTTACCTTTATC
CCACCACCTATCTATATTTTCTTTATTCTTCTTCCCCCTTTATAACACCC
ACCCCCTACCTTTACCACCTATCCCCTCCATATTACCCCACACTACACCC
CCCTTTATTTTTATTCTCACTCTCCCCCCTCTTTTCTTTTTCTACAATCT
CTCCTCTTCCTCTCCCATCCTATTTACCCCCTCCCCTTATTCTTCTCCTT
TTTTTACTACCCCCATTACCCTACTAATACACACCCCCCCCTTTAATAAT
TTCCCTTTTATCATCCCCTTTTTTTTCCATCTTTTTTCTCCCCCCTTTTA
TTATTTCTAACTTTCAATCAATCATCCCCCCCTTTCCCCCTTTTTTTTTA
TCCCCCCCTCTTTATCCTAACTATTTTTTTTCCCCCCTTCCTCTCAAATC
ATTACCATTATCCTATTCCCCCTCCACCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_i07.g1 MSMg01no080_i07.g1 CHROMAT_FILE:
MSMg01no080_i07.g1 PHD_FILE: MSMg01no080_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:27 2005
         (156 letters)



>mm_chr9_89387851_89388405
          Length = 555

 Score =  273 bits (141), Expect = 4e-78
 Identities = 147/149 (98%), Gaps = 1/149 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggggtacgtcctagaaacaggaaagagggtcacattttttaaatgtaaaatctaattca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 aggggtacgtcctagaaacaggaaagagggtcacattttttaaatgtaaaatctaattca 289

                                                                       
Query: 61  taaagttaaaaccttaacgactgccattcttaacaagcaacattcaatcttgcatgtata 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 taaagttaaaaccttaacaactgccattcttaacaagcaacattcaatcttgcatgtata 229

                                        
Query: 121 tgtagatattaaatgtacatacacatgca 149
           |||||||||| ||||||||||||||||||
Sbjct: 228 tgtagatatt-aatgtacatacacatgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 156
Length of database: 555
Length adjustment: 8
Effective length of query: 148
Effective length of database: 547
Effective search space:    80956
Effective search space used:    80956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)