Query= MSMg01no080_n13.b1 MSMg01no080_n13.b1 CHROMAT_FILE:
MSMg01no080_n13.b1 PHD_FILE: MSMg01no080_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:52 2005
(243 letters)
>mm_chr9_97949618_97950260
Length = 643
Score = 427 bits (221), Expect = e-124
Identities = 236/241 (97%)
Strand = Plus / Plus
Query: 1 agatgtaactgccaagaaagtagagtcttaaaagtaacatttcaatacgagaatacaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 agatgtaactgccaagaaagtagagtcttaaaagtaacatttcaataggagaatacaaaa 260
Query: 61 agaaaggaaataaataaagtcttcccccagcaaagaaagaaagtgacagacaacctagag 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaaggaaataaatagagtcttcccccagcaaagaaagaaagtgacagacaacctagag 320
Query: 121 aacagagaactggaacggaaaacggagttagcatctagagcatataacagcaggaattat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 aacagagaactggaacggaaaacggagttagcatctagagcatataacagcaggaaaaat 380
Query: 181 aaataccaaatcagctgattgctatgtaggcaaataaactgaacaaatcattctcaaagt 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 aaataccaaatcagctgattgctatgtaggcaaatgaactgaacaaatcattctcaaagt 440
Query: 241 a 241
|
Sbjct: 441 a 441
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space: 148356
Effective search space used: 148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no080_n13.g1 MSMg01no080_n13.g1 CHROMAT_FILE:
MSMg01no080_n13.g1 PHD_FILE: MSMg01no080_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:52 2005
(258 letters)
>mm_chr9_98104000_98104656
Length = 657
Score = 476 bits (246), Expect = e-139
Identities = 255/260 (98%), Gaps = 5/260 (1%)
Strand = Plus / Minus
Query: 1 tgaaggtgaccattttacttggtagattactgtgcagaagcattttaacatagatccgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tgaaggtgaccattttacttggtagattactgtgcagaagcattttaacatagatccgct 540
Query: 61 tgtctatttttgcttttgttgctatcccttttgtgtcatatccaataaatcattgccaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tgtctatttttgcttttgttgctatcccttttgtgtcatatccaataaatcattgccaag 480
Query: 121 accaatgtcaagaaggttctcctagtgcaggatgcacaggcaagtggaagagtacctgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 accaatgtcaagaaggttctcctagtgcaggatgcacaggcaagtggaagagtacctgct 420
Query: 181 tggcaagcatcagacctgaatttaattccctgcatgaaaatagagagaaaagaggggtag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tggcaagcatcagacctgaatttaattccctgcatgaaaatagagagaaaagaggggtag 360
Query: 241 ga--ggtttagaaggaggga 258
|| || |||||||||||
Sbjct: 359 gagggg---agaaggaggga 343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 657
Length adjustment: 9
Effective length of query: 249
Effective length of database: 648
Effective search space: 161352
Effective search space used: 161352
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
