BAC Information

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BAC

Clone NameMSMg01-080P16
Chromosome9 (Build37)
Map Location 107,437,927 - 107,438,397
singlet/doubletsinglet
Overlap geneTmem115
Upstream geneIqcf3, Iqcf4, LOC100041096, Grm2, Tex264, Rad54l2, LOC100041128, Vprbp, Armet, Dock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2
Downstream geneCyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080P16.T7 (MSMg01no080_p16.b1)MSMg01-080P16.TJ (MSMg01no080_p16.g1)
ACCAG301688AG301689
length702704
length of high quality
(start - end)
474 (41 - 514)287 (69 - 355)
definitionCHROMAT_FILE: MSMg01no080_p16.b1 PHD_FILE: MSMg01no080_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:02 2005CHROMAT_FILE: MSMg01no080_p16.g1 PHD_FILE: MSMg01no080_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATTCT
TCCCCTGACCTCAGGAACCCCTTTCACAGGGGAGCAAAAGCAGGAGCCCG
TGATAAATGCTAAGGAATAAGGTTGGCGAGAAACTTCCTCAACAGTCTCA
GGAAGAACACTGGACACTGGGTCTCCTGGGAGCTGGGAACACTGTAGAGA
GTCCATAGGTCTCAGAAAGTAAGACCTGAATTCAAAGAGCATTCTCCTGC
CTTGGCTAACGTGTTCAGTGAATAATGCAGTGAGATTACTGATGCTGCAC
TTGAGCAGGTGATGTAGAGGTCTCTGACCTGCCTGGTGTGGTCAGGAGGC
TCTCGCAGTGAGGCACACAACCTGTCTCCGTTGGTGATTGGGGTAAATTT
AGTAATACCCCAATCATCCTACATTATGAAGGGAAAGACTTACGGACCAA
GACCTCCTTCCCCATTTCCCATCACAGGAGAAAAGAGCCACAGTTTCTGT
CTATCACTGGACCAGCGCTTAGAATTTGGAAATTCTGAGGCAAGACCAAA
GGTAACTGGGCATTCTGTACCCAGGTTTAGTGCTCCGAGCCGTGAGGTAC
ACAGAGTTCCAGATACCCCATCCTTCTTTTCCTTCGAGGCCAAGTCCTGA
ATCCCTTTTCTGAAGCCGCTCCTAACACCTGTCCGTACCCCTCCCCCCTT
TT
AATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTGTATAGACCAGGCTGGCCTCAAACTCAGA
GATCTGCCTTTGTCTCCTGAGTGCTGAGATTAAAGGCATGGGCCACCACC
ACCCAGCCAGGCTGTCCATATTCTTGATAGTTAGAAATTGCCAATTTGGG
ACTGGAGAGATGACAGCGGTTAGGGGTACTGACTGCTCTTCCAGAAGACC
CTGGTTCAATTCCCAGCATCCACATGGCAGCTCACAACTGTCTGCTGCTT
AACTCCAAGATCTGACCACCTCACATAGACATACGTGCAGGCAAAAACAT
ACCAACATGCATAAAATTAACAAAAAATGGCAGTTTGGGGAAGAGCAGAT
GGTGGCAGTACTCCCCGGAGTCCCTGTGCAGGCATGGTTTCCAAATATCA
CCCACTTCCTCCCTGGTGCCAAGGCTTCCTGCCTCTGCCTGTGGGTTCTA
GCCATAATTCCAGTTGTAATCCTTTTTTCTAATTCATTTTTTATTAGGTA
TTTTCCTCGTTTATATTTTCAATGCTATCCCAAAAGTCCCCCATACCCCC
TCTCCCTAATCCTTTACCCACCCATTCCCCCTTTTTGTCCCTGAATTCCC
CTTGTACTGCCTCTTTTTACACCTCACAATGCCCATTGCGTCTTTTCTCT
CCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_p16.b1 MSMg01no080_p16.b1 CHROMAT_FILE:
MSMg01no080_p16.b1 PHD_FILE: MSMg01no080_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:02 2005
         (474 letters)



>mm_chr9_107437724_107438597
          Length = 874

 Score =  864 bits (447), Expect = 0.0
 Identities = 465/471 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcttcccctgacctcaggaacccctttcacaggggagcaaaagcaggagcccgtga 63
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gaattcttcccctgaggtcaggaacccctttcacaggggagcaaaagcaggagcccgtga 615

                                                                       
Query: 64  taaatgctaaggaataaggttggcgagaaacttcctcaacagtctcaggaagaacactgg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 taaatgctaaggaataaggttggcgagaaacttcctcaacagtctcaggaagaacactgg 555

                                                                       
Query: 124 acactgggtctcctgggagctgggaacactgtagagagtccataggtctcagaaagtaag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 acactgggtctcctgggagctgggaacactgtagagagtccataggtctcagaaagtaag 495

                                                                       
Query: 184 acctgaattcaaagagcattctcctgccttggctaacgtgttcagtgaataatgcagtga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 acctgaattcaaagagcattctcctgccttggctaacgtgttcagtgaataatgcagtga 435

                                                                       
Query: 244 gattactgatgctgcacttgagcaggtgatgtagaggtctctgacctgcctggtgtggtc 303
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 434 gattactgatgctgcacttgagcaggtgatgcagaggtctctgacctgcctggtgtggtc 375

                                                                       
Query: 304 aggaggctctcgcagtgaggcacacaacctgtctccgttggtgattggggtaaatttagt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aggaggctctcgcagtgaggcacacaacctgtctccgttggtgattggggtaaatttagt 315

                                                                       
Query: 364 aataccccaatcatcctacattatgaagggaaagacttacggaccaagacctccttcccc 423
           ||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||
Sbjct: 314 aataccccaatcatcctacattaagaagggaaagacttaaggacaaagacctccttcccc 255

                                                              
Query: 424 atttcccatcacaggagaaaagagccacagtttctgtctatcactggacca 474
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 atttcccatcacaggagaaaagagccacagtttctgtctatcactggacca 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)