BAC Information

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BAC

Clone NameMSMg01-080P21
Chromosome9 (Build37)
Map Location 40,016,977 - 40,146,718
singlet/doubletdoublet
Overlap geneZfp202, Scn3b, Gramd1b
Upstream geneOlfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986
Downstream geneLOC270148, 9030425E11Rik, LOC100043076, LOC100043071, Hspa8, Bsx, 4931429I11Rik, Crtam, 2810457I06Rik, LOC628495
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080P21.T7 (MSMg01no080_p21.b1)MSMg01-080P21.TJ (MSMg01no080_p21.g1)
ACCAG301698AG301699
length716707
length of high quality
(start - end)		474 (66 - 539)501 (65 - 565)
definitionCHROMAT_FILE: MSMg01no080_p21.b1 PHD_FILE: MSMg01no080_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:03 2005CHROMAT_FILE: MSMg01no080_p21.g1 PHD_FILE: MSMg01no080_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,016,977 - 40,017,450)(40,146,218 - 40,146,718)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAATCCGCGGAATTCACT
AGTGGTTTCACAGTGTAGTCTAGTAGTTGTAGTCAAGTAGTCTTTCTTGT
TCTGACCATGGAACAATTCTTAGAAAAGATGGTTTTTACCAAGGCCTCCC
ATTAAAACAGCAATTAGGGAGTTGAATGATTTAAGGCCCATCTTGGGTTT
TAAACCATAACCTGAAGAAGAATATAGTTTGGCCTGAAGAAAGATGATAG
GTTGGAGAAGCAGAAGTAAGGCCAGTGTTTTCCTCAAGTGCTGAAGGTTC
CGAATCAGCACCATTACCAGGCTCCCCATGGAAATCCTTCTGCATCTTCC
CATTCCCTTTGTCTCTGGATGGAGCCTACCTCAAAATACAGTAGGATACC
TGAAGCATCACCCCCTGATGGGATCCTTGTGTCATTGCAGGGACTGGTCA
CATTCAAGGATGTGGCTCTGTGCTTCTCACAGGATCAGTGGAGTGATCTG
GATCCAACACAAAAAGAATTCTATGGAGAGTATGTCTTGGAAGAAGACTG
TGGAATTGTGGTCTCTCTGTGTAAGGAGCTTTATGTATTTCCATGCCATT
CTAGCCACAAACATCTTTTCCTGTTGGAATATAGGGAATCGGAGACCTTG
AACTACATGTACTAAACTTTCACTAATGTATGCCTACCCCTATTGCGCAG
ATTAATGATCAGTTAG

GTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCAGAGGTCAATATCAGATGTTCTCTTGGATCATTTT
CTACCTTTTTTTTGAGATAAGATCTCTCACTGAACCAGGAGTGCCCTAAC
TTGGCTAGACGGGCTGAGCAGCCAGTCCAAGGAACCTTCCTCTCAGGACT
GGGGTAACAGGAACATGTTGCCGTATCAAGCTTGTGGGTGATAGAACTTA
GGGTCCTCGTGTTTGTGTGGTGGGCACTTGACCAATGGAGGCCATGCTCC
TTGGATTCTAAAGACTAGGAAAGAGGAACCAATAGGTGAAGGCAGCTGAT
TCCTGGAAGTACCCTGAACCCAAAGAGGTGTATAGTCAGCTGCTCCACAA
GATGTAATTGCCCATTCTTTCCTGGACAAAACTGACTCGAGGGTAGAATT
CTTCCAGGATTAGACTTCAGGTTTTAGCTGTTCAGAGAACAGGCTCCATC
CGTGACTGCAGGGAACTCTTTGCATAAAGACAACAGTACGTTTTCCATCT
TTTCCACTTCAACCTCATCCTGTATCCCAAAAGCTGTATGTTGCGGCAAA
ATTCCCAAGGTGTGTGTCTTTGTATTGACTGGTGAAGGATAATTTTTAAA
AGTAGTGATTGATTXXXXXXXXXXXXXXXXXXXXXGGGGAAACTAGGCAC
CTATCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_p21.b1 MSMg01no080_p21.b1 CHROMAT_FILE:
MSMg01no080_p21.b1 PHD_FILE: MSMg01no080_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:03 2005
         (474 letters)



>mm_chr9_40016777_40017650
          Length = 874

 Score =  901 bits (466), Expect = 0.0
 Identities = 472/474 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagtctagtagttgtagtcaagtagtctttcttgttctgaccatggaacaattcttagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagtctagtagttgtagtcaagtagtctttcttgttctgaccatggaacaattcttagaa 260

                                                                       
Query: 61  aagatggtttttaccaaggcctcccattaaaacagcaattagggagttgaatgatttaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagatggtttttaccaaggcctcccattaaaacagcaattagggagttgaatgatttaag 320

                                                                       
Query: 121 gcccatcttgggttttaaaccataacctgaagaagaatatagtttggcctgaagaaagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcccatcttgggttttaaaccataacctgaagaagaatatagtttggcctgaagaaagat 380

                                                                       
Query: 181 gataggttggagaagcagaagtaaggccagtgttttcctcaagtgctgaaggttccgaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gataggttggagaagcagaagtaaggccagtgttttcctcaagtgctgaaggttccgaat 440

                                                                       
Query: 241 cagcaccattaccaggctccccatggaaatccttctgcatcttcccattccctttgtctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagcaccattaccaggctccccatggaaatccttctgcatcttcccattccctttgtctc 500

                                                                       
Query: 301 tggatggagcctacctcaaaatacagtaggatacctgaagcatcaccccctgatgggatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 501 tggatggagcctacctcaaaatacagtaggatacctgaagcatcacgtcctgatgggatc 560

                                                                       
Query: 361 cttgtgtcattgcagggactggtcacattcaaggatgtggctctgtgcttctcacaggat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttgtgtcattgcagggactggtcacattcaaggatgtggctctgtgcttctcacaggat 620

                                                                 
Query: 421 cagtggagtgatctggatccaacacaaaaagaattctatggagagtatgtcttg 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagtggagtgatctggatccaacacaaaaagaattctatggagagtatgtcttg 674


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no080_p21.g1 MSMg01no080_p21.g1 CHROMAT_FILE:
MSMg01no080_p21.g1 PHD_FILE: MSMg01no080_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:03 2005
         (501 letters)



>mm_chr9_40145845_40146745
          Length = 901

 Score =  891 bits (461), Expect = 0.0
 Identities = 491/501 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaggtcaatatcagatgttctcttggatcattttctaccttttttttgagataagatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 cagaggtcaatatcagatgttctcttggatcattttctaccttttttttgagataagatc 815

                                                                       
Query: 61  tctcactgaaccaggagtgccctaacttggctagacgggctgagcagccagtccaaggaa 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 814 tctcactgaaccaggagtgccctaacttggctagacgggctgaacagccagtccaaggaa 755

                                                                       
Query: 121 ccttcctctcaggactggggtaacaggaacatgttgccgtatcaagcttgtgggtgatag 180
           |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 754 ccttcctctcaggactggggtaacaggaacatgttgccatatcaagcttgtgagtgatag 695

                                                                       
Query: 181 aacttagggtcctcgtgtttgtgtggtgggcacttgaccaatggaggccatgctccttgg 240
           |||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 694 aacttagggtcctcgtggatgtgtggtgggcactttaccaatggaggccatgctccttgg 635

                                                                       
Query: 241 attctaaagactaggaaagaggaaccaataggtgaaggcagctgattcctggaagtaccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 attctaaagactaggaaagaggaaccaataggtgaaggcagctgattcctggaagtaccc 575

                                                                       
Query: 301 tgaacccaaagaggtgtatagtcagctgctccacaagatgtaattgcccattctttcctg 360
           |||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 574 tgaacccacagaggtgtatagtcagctgctccacaagatgtaattgggcattctttcctg 515

                                                                       
Query: 361 gacaaaactgactcgagggtagaattcttccaggattagacttcaggttttagctgttca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gacaaaactgactcgagggtagaattcttccaggattagacttcaggttttagctgttca 455

                                                                       
Query: 421 gagaacaggctccatccgtgactgcagggaactctttgcataaagacaacagtacgtttt 480
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gagaacaggttccatccgtgactgcagggaactctttgcataaagacaacagtacgtttt 395

                                
Query: 481 ccatcttttccacttcaacct 501
           |||||||||||||||||||||
Sbjct: 394 ccatcttttccacttcaacct 374


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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