BAC Information

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BAC

Clone NameMSMg01-081B21
Chromosome9 (Build37)
Map Location 31,584,911 - 31,585,421
singlet/doubletsinglet
Overlap geneEG666576
Upstream geneAdamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558
Downstream geneBarx2, LOC100042266, Tpi-rs4, LOC666619, LOC666622, Grit, Kcnj5, Kcnj1, Fli1, LOC669759, LOC100041398, Ets1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081B21.T7 (MSMg01no081_b21.b1)MSMg01-081B21.TJ (MSMg01no081_b21.g1)
ACCAG301794AG301795
length718719
length of high quality
(start - end)
515 (46 - 560)479 (74 - 552)
definitionCHROMAT_FILE: MSMg01no081_b21.b1 PHD_FILE: MSMg01no081_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:13 2005CHROMAT_FILE: MSMg01no081_b21.g1 PHD_FILE: MSMg01no081_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAGTTTTCAACCCCAACTTGTCTTCATCATCAGGCTTATGTTTGT
ATTTCCTTGGGCATCATATAAGCCTTATTACCTTTAAGTTCATTGGGTGG
TTTCATTGTAAATATCCCAAGTCTCAAGATGAGGAGCCTGCCCTCCCTTC
TGTATTACAGCTGTTCCTTTCTTGATGAAGTATTTGCCATCACCTCGTTA
AATGTTGTTAGCTTAGTGGTAGAAGCCAATTTTGTCCGCATGTATTATGC
TAACCATCTCTCACTGTCTACTGACCTGTAAATAAAAATATGATTCCTGT
CCTATCCAGAACCAATGAACTGGGAGATGAAATCCTTGGAAATCCATGTT
TTTAATGACCGTGCACCGACTATCCTGTGAGGTACTTGAGTTATGCCTCA
TACAATTGGAAGGGTTTAGTTACATGAGCACAAAAATCATACAGTGGTAG
GAGGTGATTTTCAGAGGATAAACAGTGTGAGCAAAGGTGTGGATTCTGAT
AACGAAGCTTATAAATGAGCTGTGTCTCATTGGGGATAATAGTCCTGTAG
AAGGAAGTCAACTGTTTGTAGGCAGAACTCACATGTTCCACTTAAATGTG
AAGGGAAGTGGTTACTGCTTATAGTAATACAATAACACTTGATAAAAAAA
ATCCTGGATTATGGTTAG
TCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAC
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATCAATTT
ATGACATTTCTAGCCAAATGGATGGACCTGGAGGGCTTCATCCTGAGTGA
GGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGAATAGCG
GATATTATCCCACAACCTAGGATACCCAAGATATAAGATACAATTTCCTA
ATCACATGAAACTCAAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_b21.b1 MSMg01no081_b21.b1 CHROMAT_FILE:
MSMg01no081_b21.b1 PHD_FILE: MSMg01no081_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:13 2005
         (515 letters)



>mm_chr9_31584612_31585526
          Length = 915

 Score =  888 bits (459), Expect = 0.0
 Identities = 498/511 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctagttttcaaccccaacttgtcttcatcatcaggcttatgtttgtatttccttg 64
           |||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 810 gaattctagttttcaatcccaacttgtcttcatcatcaggctcatgtttgtattttcttg 751

                                                                       
Query: 65  ggcatcatataagccttattacctttaagttcattgggtggtttcattgtaaatatccca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 ggcatcatataagccttattacctttaagttcattgggtggtttcattgtaaatatccca 691

                                                                       
Query: 125 agtctcaagatgaggagcctgccctcccttctgtattacagctgttcctttcttgatgaa 184
           |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| 
Sbjct: 690 agtctcaagacgaggagcctgccctcccttctgtattacagctgtttctttcttgatgag 631

                                                                       
Query: 185 gtatttgccatcacctcgttaaatgttgttagcttagtggtagaagccaattttgtccgc 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 630 gtatttgccatcacctcgttaaatgttgttagcttagtggtagaagccaattttgtccac 571

                                                                       
Query: 245 atgtattatgctaaccatctctcactgtctactgacctgtaaataaaaatatgattcctg 304
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 570 atgtattatgctaaccatctctcactgtctactgacctggaaataaaaatatgattcctg 511

                                                                       
Query: 305 tcctatccagaaccaatgaactgggagatgaaatccttggaaatccatgtttttaatgac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tcctatccagaaccaatgaactgggagatgaaatccttggaaatccatgtttttaatgac 451

                                                                       
Query: 365 cgtgcaccgactatcctgtgaggtacttgagttatgcctcatacaattggaagggtttag 424
            || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tgtacacagactatcctgtgaggtacttgagttatgcctcatacaattggaagggtttag 391

                                                                       
Query: 425 ttacatgagcacaaaaatcatacagtggtaggaggtgattttcagaggataaacagtgtg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ttacatgagcacaaaaatcatacagtggtaggaggtgattttcagaggataaacagtgtg 331

                                          
Query: 485 agcaaaggtgtggattctgataacgaagctt 515
           |||||||||||||| ||||| ||||||||||
Sbjct: 330 agcaaaggtgtggactctgagaacgaagctt 300


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)