BAC Information

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BAC

Clone NameMSMg01-081E03
Chromosome9 (Build37)
Map Location 102,025,773 - 102,026,092
singlet/doubletsinglet
Overlap geneEphb1
Upstream gene3222402P14Rik, LOC100041065, EG382099, 9630041A04Rik
Downstream geneKy, LOC664843, Cep63, Anapc13, Amotl2, EG434510, Ryk, Slco2a1, Rab6b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081E03.T7 (MSMg01no081_e03.b1)MSMg01-081E03.TJ (MSMg01no081_e03.g1)
ACCAG301902AG301903
length702702
length of high quality
(start - end)
327 (42 - 368)337 (70 - 406)
definitionCHROMAT_FILE: MSMg01no081_e03.b1 PHD_FILE: MSMg01no081_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:24 2005CHROMAT_FILE: MSMg01no081_e03.g1 PHD_FILE: MSMg01no081_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTGAAGTTACCCTTAGAAAAGTCGTTCCATGGTCTCCTAGTCAGTCGTCA
CCCTCTTTAACTCATGTGGTCTTTGTCCAGCTTGTCACAGACTTCTCATA
TGCCCCCTCCTACAGTCTTGCTCCTCTTACGATCCTCCCTGAAATAAGGT
GCGAGGGCTGAGTTAGTCATTTGCCACCTCAGAGGCTAGTCCCCACTTGT
TTGACACAGCCTGGCCAAGCCATGGTTATAAGTAACCCTGAGGCAGGAGC
TACAAGAGCTCAGAGAATAATGTCACTGCTCTAGCAGGTCACTGCTCTGC
CCAGCCCCAAAGATAATGAGAAGGAGGGCTCTTTCTAAACCATAAGGCAC
TCTATCTATATTCGAAAGGCATTCTTCTGGGTAGGGTGAGGAGGAGAAAT
CCGTCTGAATCCTCGTGATAACAATTTTACATCTATAATTCCTTCCTCTT
CCTACAGCATTGGAATTTGATGGGGACTAGCAGTGGCCAGCTGCAGAATG
CCAGAGCCCCTTAGGAAAGGCTCAGCTAGGACTTTATTTAATGAACACTT
TCTGAGGGCATCTTCTTTTGCGACCTACACAAAACCATAAGGCCTGCTGC
TAATATATGCGCTCCCTTGTCTGAGTCCCCCTTCCGGCGCTTCTGAAGTT
AT
AATGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCAGCCGAGGAATACCGAAGGGCTGAGAAGC
AATTGAAAAAAATATTCAACATCCTTAATCATCAGGGAAATGCAGATCAA
AACAACCCTGAGATTCCACCTGGGGTGACAGCATATACTGGCAAGGATGT
GGAGAAAGAGGAACACTCCTCCATTGCTTGTGGGATTGCAAGCTTGTACA
ACCACTCTGGAAATCAGTCTGGTGGTGCCTCATAAAACTGGGCATAGTAC
TACTGGTAGATGCAGCAATACCTCTCCTGGGCATATACCCAGAAGATGTT
CCAACTAGTTATAACGACACATGCTCCACTATGTTCATAGAAGCCCTATT
TATAATAGCCAGAAGCTGGAAAGAACCCAGATGTCCCTCAACAGAAAAAT
TAATTCTTAACTCTTGCATTTGCTCATCTACTCTTTTAAAGAAAAAAAAA
CTCACTAGAATATTTTCTTTTTGTCATTTTCCCCTTTGTTGTTTTCCATT
TTAAAATCTTTTATTTTGATTTTCCCTCCCATTTGCTGTTCCTTTTTTGC
ATGTTTCATCTTTTCTTTTTCAGCACTCAGAACAGGAAAAATACCGCACC
TTCAAGATAATCATGAACTAACCATCAATTCCTTGAATTATGCCAATATT
TA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_e03.b1 MSMg01no081_e03.b1 CHROMAT_FILE:
MSMg01no081_e03.b1 PHD_FILE: MSMg01no081_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:24 2005
         (327 letters)



>mm_chr9_102025570_102026296
          Length = 727

 Score =  557 bits (288), Expect = e-163
 Identities = 312/320 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgaagttacccttagaaaagtcgttccatggtctcctagtcagtcgtcaccct 63
           |||||||||||||||   ||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 523 ggaattctgaagttaaggttagaaaagtcgttcgatggtctcctagtcagtcttcaccct 464

                                                                       
Query: 64  ctttaactcatgtggtctttgtccagcttgtcacagacttctcatatgccccctcctaca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ctttaactcatgtggtctttgtccagcttgtcacagacttctcatatgccccctcctaca 404

                                                                       
Query: 124 gtcttgctcctcttacgatcctccctgaaataaggtgcgagggctgagttagtcatttgc 183
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 403 gtcttgctcctcttacgatcctccctgaaataaggtgtgagggctgagttagtcatttgc 344

                                                                       
Query: 184 cacctcagaggctagtccccacttgtttgacacagcctggccaagccatggttataagta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 cacctcagaggctagtccccacttgtttgacacagcctggccaagccatggttataagta 284

                                                                       
Query: 244 accctgaggcaggagctacaagagctcagagaataatgtcactgctctagcaggtcactg 303
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 283 accctgaggcaggagctacaagagctcagagaataatgtcactactctagcaggtcattg 224

                               
Query: 304 ctctgcccagccccaaagat 323
           ||||||||||||||||||||
Sbjct: 223 ctctgcccagccccaaagat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)