BAC Information

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BAC

Clone NameMSMg01-081J02
Chromosome9 (Build37)
Map Location 115,195,022 - 115,195,239
singlet/doubletsinglet
Overlap geneStt3b
Upstream gene4921528I07Rik, Bcl2a1c, 4930520O04Rik, Crtap, Glb1, Ccr4, Trim71, LOC100043808, Cnot10, LOC665772, Dync1li1, Cmtm6, Cmtm7, Cmtm8, Gpd1l, LOC100043813, Osbpl10, LOC100043812
Downstream geneLOC100039567, LOC670467, EG546164, Gadl1, EG668829, Tgfbr2, LOC100043817, LOC100043819
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081J02.T7 (MSMg01no081_j02.b1)MSMg01-081J02.TJ (MSMg01no081_j02.g1)
ACCAG302140AG302141
length749748
length of high quality
(start - end)
220 (46 - 265)78 (70 - 147)
definitionCHROMAT_FILE: MSMg01no081_j02.b1 PHD_FILE: MSMg01no081_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:49 2005CHROMAT_FILE: MSMg01no081_j02.g1 PHD_FILE: MSMg01no081_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAA
TTCCTTCCCTATTACATTAAGTTTAGGGTAAAGCACAAAAACTTACATTG
TTGTTCAATACTGGGGTGCCTAGAGGAGTAAACTGTGCTGCCATTACTTG
ACTCTTGTAAGCAAAGCGCCAGGAGCATGAAGTCCTTCCGAGGGTCACCC
AGGCACTCTCACGCACCCGCTCATGAGTGAAGAACAGAGAATAAGTTGTG
TGTTTGGCAAGGTAAGAAAGGCAATGCTTAAAATTGCTCAAAGAAGGTGA
TTGATAAATACTTTTTTTAATATCTGATGCCATAAAAAGACAGGCCTGTG
GTTACTCTCAATGCCACCTAAGTTTGCTTTGAATTGTATTTTAAGAGTTG
ACTACTAGAAACTCGCAAGAAAGAAAAAAACCAAACCAAACCTACCACGA
ACCCCCCTCCCTGCACACATTCGTTTACAGCCCCAAGTCTAATATGTGAA
CCTCCCTGATTTATACACTTCTCAAGAGATTCCCACACCAAAGTATGTAC
TTCTTTTTATCACCCACCTATAGTTTTCTACTTACTTGCCATACTTACCG
GTTTTACACCACGTCCCCTAGTTTCCCACCCAAAACCTACCTCCCTCTAT
CACACCCCCCCATCTGCCTCGCCTCACTCTCCCACACTCCACAACCCCAC
AACACCAACACGTAGAACATGAACACACAACGACAGAAATCGACCAATT
CCATGAAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCACGGATGACATTTCCATCTTCTAGCCTCCA
TAATCCCGGGTCTCCTTCACTGTTATCAGCGGGGCTTTCCAGAGTAAAAC
TCTAATAGTATACTGTAAGTTTTTATAGCATATTGAATTTCATGGCATGG
TTCTGAATTCTACCCCGACCCACCAGTACGCTTCACCGAAAGTCTTTTCT
TGTTGTATCCCTCGGAGCTTGAATGGCAATTGTACATTCTCGGAAGACTG
CCTCGCCAGACCGGATTCAATTCTAACCTGCTTTCCTTATCTTCCTACTA
GAAGAGTGTGTCTGCCCGTGTGAGTGTGCTTCTTGTCAGTTGCTCACAAG
ACGGCACCCAGCCCGATGTGTACCCCTATCTCTCCAACCCCTTCACACTC
TCCACCCCTACCCACCNCACCTATCTCCATTCCACCCATCCTATATTTCT
GCTCACCCGTCCCTTCCCCGATTTTATAACTCTCCACACAACTCTTTTCC
TGTTCTTTCCTCACACTATTTTATCCTCCCCACCCTTTTCATTTACTGAA
TATCCATTCTATTCGTCTATCTTCCGTCCCCTTCTCTCTATCACTCACTC
CTCTCGCTCCCCTACGAGTCCCCACCTTCACACCCCTTCTTTATACTAAT
ACAACATATACTCATTCCCTAACCCAACCCCATTATCTTACGTACCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_j02.b1 MSMg01no081_j02.b1 CHROMAT_FILE:
MSMg01no081_j02.b1 PHD_FILE: MSMg01no081_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:49 2005
         (220 letters)



>mm_chr9_115194820_115195439
          Length = 620

 Score =  406 bits (210), Expect = e-118
 Identities = 216/218 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattccttccctattacattaagtttagggtaaagcacaaaaacttacattgttgttca 62
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gaattccttccctagtagattaagtttagggtaaagcacaaaaacttacattgttgttca 361

                                                                       
Query: 63  atactggggtgcctagaggagtaaactgtgctgccattacttgactcttgtaagcaaagc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 atactggggtgcctagaggagtaaactgtgctgccattacttgactcttgtaagcaaagc 301

                                                                       
Query: 123 gccaggagcatgaagtccttccgagggtcacccaggcactctcacgcacccgctcatgag 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gccaggagcatgaagtccttccgagggtcacccaggcactctcacgcacccgctcatgag 241

                                                 
Query: 183 tgaagaacagagaataagttgtgtgtttggcaaggtaa 220
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tgaagaacagagaataagttgtgtgtttggcaaggtaa 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 620
Length adjustment: 9
Effective length of query: 211
Effective length of database: 611
Effective search space:   128921
Effective search space used:   128921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)