BAC Information

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BAC

Clone NameMSMg01-082E06
Chromosome9 (Build37)
Map Location 18,103,091 - 18,103,425
singlet/doubletsinglet
Overlap geneChordc1
Upstream geneLOC100040090, LOC244710, LOC100040508, EG665548, LOC665554, LOC665567
Downstream geneNaalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1, Muc16, Olfr24, Olfr828, Olfr829, Olfr830, Olfr831-ps1, Olfr832, GA_x5J8B7W6RL5-13870817-13871726, Olfr834, Olfr835, Olfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1, Olfr843
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082E06.T7 (MSMg01no082_e06.b1)MSMg01-082E06.TJ (MSMg01no082_e06.g1)
ACCAG302675AG302676
length703710
length of high quality
(start - end)
244 (76 - 319)335 (72 - 406)
definitionCHROMAT_FILE: MSMg01no082_e06.b1 PHD_FILE: MSMg01no082_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:42 2005CHROMAT_FILE: MSMg01no082_e06.g1 PHD_FILE: MSMg01no082_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:42 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTCGNTACGGGGCNGCGG
AATTCTATCAGCTACTTNCAGCAGACCTAATACCAATACTCTTCAAACTA
TTCCACAATATAAAAACAGAAGGCCCACTACCCAGTTCGTTCATTCTATG
AAACCATAATTATGCTTCTACCCAAATCACACAAATACCAGATAAAGAGG
AACAATTTCCCTTATGAACACTGATGCAAAAATACTCAACAAATTTATTA
GACATTTTCTTTATTTTCATTTCAAATGTTATCCCCTTTCTTGGTTTCCC
CTCTGAAAACTCCCTATGTTTACTCCTTTCCCACTGCTCACCAAACCACC
CTCTTTTTCGTCTCCTATCCTGGCATTCCCCTACATTGGGGTATCAAGCC
TTCTCAGGACCAAGGGTCTCTCTTCCCATTGATGTCCAATAAGGCCATCC
TCTGCTACACATGCAGCTGGAGCCATGGATCCCTCCATGTTTACTCTTTG
GTTGGTGGTTTAGTCCCTGGGAGCTCTGGGGTATCTGGTTGGTCCATATT
GTTCTTCCCATGGGCCTGTTAGCTCCTTCTTCTCCTTCAGTCCTTTCTCT
AGCTCCTCCATCGGGGAACTTGTGTTCATTACAATTGATGGTTGAGAGCA
CCCGCTTTTGTTTTTGTGAGGCACTGGCAGAGCCTCTTGCAAGACATCTA
TTN
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTTTCTCTCTCCCAGCCCCTAGGTAGGG
AACCCCAGCTACTGAGGAAGGGCAGCCCAGGGGACATGGGGTATAGGAAG
AACATCCACAGCCTCCCCCTACCTGCCCCAAACCCTTGAGTTCCCTGGGG
CCCCAAACAAGCAGGCAGAGGAAGGATGGGAGTTCTTCATGGGGTCTGGG
ATCCACATCTTGCAACTGACTCCCCAGGGGGTGCTGGGAGGCAGGAGGTG
GAGGTCTGGGAGCGAACATCCTGACACTTCTGGTAGTGGGAGCATGCATG
CAGCCTACATAGCCTCTGAGAGATTGGCAGCACTGGGTTCACACCAAAAC
ATGTGACAGCAGACGGAGGCTAGGCCGGCATACATGATGCATGCTAACAT
GTGTACTTATTTGCCCACAGCCAGGGAGGAGAGAAACTGCACCCGACACT
TCCCCAGCACAGCTTCTGTCTGCTGGTGCAAGATGGCACGTGCGGCATGG
GCCACGCTGATGTGACTTGGAGCCCACTGCTCACGGCATTTGGAAGACAG
ATTTGACTCCAGGGCCTCTTTATTCACATCTACTTCTACAGGTGAAGCCC
GTGGGTACGTTTCCCCGGTACCATATATTTGGGAACCTTTCTTGTCTCTG
CCTCATTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_e06.g1 MSMg01no082_e06.g1 CHROMAT_FILE:
MSMg01no082_e06.g1 PHD_FILE: MSMg01no082_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:42 2005
         (335 letters)



>mm_chr9_18102891_18103625
          Length = 735

 Score =  609 bits (315), Expect = e-179
 Identities = 330/335 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtttctctctcccagcccctaggtagggaaccccagctactgaggaagggcagcccagg 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtttctctctcctagcccctaggtagggaaccccagctactgaggaagggcagcccagg 260

                                                                       
Query: 61  ggacatggggtataggaagaacatccacagcctccccctacctgccccaaacccttgagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggacatggggtataggaagaacatccacagcctccccctacctgccccaaacccttgagt 320

                                                                       
Query: 121 tccctggggccccaaacaagcaggcagaggaaggatgggagttcttcatggggtctggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccctggggccccaaacaagcaggcagaggaaggatgggagttcttcatggggtctggga 380

                                                                       
Query: 181 tccacatcttgcaactgactccccagggggtgctgggaggcaggaggtggaggtctggga 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 tccacatcttgcaactgactccccagggggtgctgggaggcaggaggtggaggtctggaa 440

                                                                       
Query: 241 gcgaacatcctgacacttctggtagtgggagcatgcatgcagcctacatagcctctgaga 300
           |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 gcgaacatccagacacttctggtagtgggagcatgcatgcagcctacacagcctctgaga 500

                                              
Query: 301 gattggcagcactgggttcacaccaaaacatgtga 335
           |||||||||||||||| ||||||||||||||||||
Sbjct: 501 gattggcagcactgggctcacaccaaaacatgtga 535


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)