BAC Information

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BAC

Clone NameMSMg01-083D05
Chromosome9 (Build37)
Map Location 107,894,304 - 107,894,663
singlet/doubletsinglet
Overlap geneD330022A01Rik
Upstream geneDock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, 6230427J02Rik
Downstream gene1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083D05.T7 (MSMg01no083_d05.b1)MSMg01-083D05.TJ (MSMg01no083_d05.g1)
ACCAG303389AG303390
length696687
length of high quality
(start - end)		364 (48 - 411)456 (74 - 529)
definitionCHROMAT_FILE: MSMg01no083_d05.b1 PHD_FILE: MSMg01no083_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:52 2005CHROMAT_FILE: MSMg01no083_d05.g1 PHD_FILE: MSMg01no083_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTCCATTCATTACTGCAACCCTAAGGGGATACAAGCTACAGAT
GGTAAAACTGGCCACAATGTGCTTGCAGACAGAGCAAACCCAGTGCCCAG
GAAAATTAGCCCCAAGACCTGCTTCCCCACAGAGTCTGAATTCCAGCTGC
CTCCTCTTACCATTAGAACCGTATCTGCCTATAAAATCTAAGCCCAGCCA
ACAAGAAAATCAAAAGTTAGCCGGGCGGTGGTGGCTCATGCCTTTAATCC
CAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCT
GGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAATCCTGC
CTCAAGAAACAAACCACCAATAATATAAAATAAAAAAATCAAAAGTTTTG
TCTACATTCAACAAACAAAAGAACCCTTGGTAGAAGAAATAAAACGAAGG
ATTACTTGTGTGGATATCAACTGCAGGGTACCAAAGACTCTTCTGAGAGG
AAATGAAGACGCGCTATGAGTTGGCCTGGAATACAGCTACTCCAGCCTAA
TATTATTCTGCAGACTGAGATTTATAGAGCCATTGTCTCTAAGATTTTGC
AGTGTATTATTTTTCCTGTTTAAACGGCTTTTGTGAGATAAGGCTT

CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTCCTCTCTGACTTACTTAGTTAGGG
ATTCCATTGCTGTGAAGAGACACCATGACCAAGGCAACATTTATAAAAGG
AAAACATTTAATTGGGGATGGCTTATAGGTTCTGAAGTTCAGTCAACTAT
CATCACACCAGGAATCGTGGCAGCATCCAGGCAGGTTCTGGAAGAGCTGA
GAATTCTACATCTTGATCCAAAGACAGTCAGGAAAAACTGACTCTACTGT
ACTGTTCTTGCTGTCCTGGGTAGAGGTTCAAAACTGACCCCCATAGTGAT
GTACTTCCTCCAAAAAGGCCTTCTCTATTCCAACAAAGCCACACCTCCTA
ATATTGCTATTCCTTGGGCCTAAGCATATTCAAACCACCACATTCCCCAA
CTTGCTTTTGGTTGGTGTTTTTTCACAGCAATAGTAACCCTGACTAAAAT
AACTAGACTTGGGGATAGAATCATGGATCAGTAGGCTAGAGCACTTACTG
TTGTTGTACAAAGTTTTGTTTCACGTTTCCTTCTTTACAATTCCCAGATC
TTGGTGGATCGGGACCCTTTTCCTGAAATCGTCGTTTCTGTTTGCCATAA
TTCTTATACTTAATTTTATCTCTACATATTTTCTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_d05.b1 MSMg01no083_d05.b1 CHROMAT_FILE:
MSMg01no083_d05.b1 PHD_FILE: MSMg01no083_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:52 2005
         (364 letters)



>mm_chr9_107894243_107895006
          Length = 764

 Score =  673 bits (348), Expect = 0.0
 Identities = 357/360 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttccattcattactgcaaccctaaggggatacaagctacagatggtaaaactgg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gaattcttccattcattactgcaaccctaaggggatacaagctacagatggtaaaactgg 362

                                                                       
Query: 65  ccacaatgtgcttgcagacagagcaaacccagtgcccaggaaaattagccccaagacctg 124
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ccacattgtgcttgcagacagagcaaacccagtgcccaggaaaattagccccaagacctg 302

                                                                       
Query: 125 cttccccacagagtctgaattccagctgcctcctcttaccattagaaccgtatctgccta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cttccccacagagtctgaattccagctgcctcctcttaccattagaaccgtatctgccta 242

                                                                       
Query: 185 taaaatctaagcccagccaacaagaaaatcaaaagttagccgggcggtggtggctcatgc 244
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 taaaatctaagcccagccaccaagaaaatcaaaagttagccgggcggtggtggctcatgc 182

                                                                       
Query: 245 ctttaatcccagcacttgggaggcagaggcaggtggatttctgagttcgaggccagcctg 304
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 181 ctttaatcccagcacttgggaggcagaggcaggtggatttctgagttccaggccagcctg 122

                                                                       
Query: 305 gtctacagagtgagttccaggacagccagggctacacagagaatcctgcctcaagaaaca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtctacagagtgagttccaggacagccagggctacacagagaatcctgcctcaagaaaca 62


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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