BAC Information

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BAC

Clone NameMSMg01-083K03
Chromosome9 (Build37)
Map Location 55,058,723 - 55,059,221
singlet/doubletsinglet
Overlap geneFbxo22
Upstream geneLOC100039064, Gldn, Dmxl2, 4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2, C630028N24Rik, AY074887, Psma4, Chrna5, Chrna3, Chrnb4, EG640554, LOC664897, 1700071A11Rik, Ube2q2
Downstream geneNrg4, AI118078, Etfa, LOC546133, Isl2, Zfp291, LOC664980, 4930563M21Rik, LOC664995, LOC665005, Rcn2, Pstpip1, Tspan3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083K03.T7 (MSMg01no083_k03.b1)MSMg01-083K03.TJ (MSMg01no083_k03.g1)
ACCAG303698AG303699
length682692
length of high quality
(start - end)
503 (41 - 543)258 (75 - 332)
definitionCHROMAT_FILE: MSMg01no083_k03.b1 PHD_FILE: MSMg01no083_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:24 2005CHROMAT_FILE: MSMg01no083_k03.g1 PHD_FILE: MSMg01no083_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAAT
TCCCAGCTGCTCAAGTTCCTTATAAAGTGGTATAGTATTCTGTTAACCTA
TATTGCCCACCCTTATTTAAATTCAAATTTCTAGATTATTTATACCTCAT
ATAAGGTATAAATGTAGACTATATTAGGAAATATAGACAAAAAAGTTTGT
AAATATAGCATAGATTCGGCCCCTCCCCCATTTTAAAAAAAATAGCTGCA
TTTGACTCATTGGATGAAGAGAGAGGTGATGACTTTATGTGTGTCTGGAG
CTGTATCTCTGTCAGTGCATGGGGACACATGAGTTGCCTTAGGTACATCC
ACTTCCTCTATGTTCATATTTACACCTCCCTTATCGTCAGTGAGAAACTT
GGCTCATAGCTCCTCCCACCCACCCCTTCTCCTCTGAGAGGGGGCCCCTC
CATACATACCTCCCCCAATCCCCGCCCCAAATACCATCAAGTCTCTGCCA
GATTAGGTATTTCCTCTCCCACTGAGGCCAGACTAGCTAGCCTTGTAGAC
TGAGCTGCATGCAGTCTGCTGTGTATGTCCAGACATGTATGTTCCTTGCG
TGGTGTTTCTGTCTCTGAGAACTCCCAGGGGTCTGGATACCCGGTGCACT
CCGGCTTTCCCCCTCCTCTCCCTGGGAGGACG
CATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGGGGAGTTTTCGGAGGTATATAAGA
GCTAGGACCCCCATAGGCAGGGTGGGCACTATTAGGAGGTGTGACCTTCT
TGGAATGGGTGTGGCCTTGTTAGAGGAAGTGTGTAACTGTGGGGACGGAC
TTTGAGAGGTCAGATGCTCAAGCTAGGCCTAGTGTGGCACTCACTTCCTG
CTGCCTGAGGATCAGAACGTAGAACTCTCAGGTCCTTCTCCAGCACTATG
TCTGGCTGCACACCACCATGCTTCCTGCCATGATGATAATGTACTAAACC
TCTGAAACTGTAAGCCAGCCCTGATGAAATGCTTTTTTCTTCTAAGATGC
CGTGCATATGCCCCCCTTATTGCTTTATATACCCTATCTGACACCCATTC
TTTCCTACTATTTTTTATTTTTAGAATGTGTTTTTTATATTTTTTTCTCC
ATCTCCTTTCTTTACATTCTTTTCGTTGCCTAATCTATCTCCTCCTTTTC
TCCACCTGTTTTTTTTTTTACGTCTTTCTTTTCTTCCTTTTCTTTCGTCT
TCTGATTAATTATTTCTCCCCCTCTTTCCTCTTTCTTTTTCATTCTCTTT
TTATTTTCCCCCTTCCTCATTTTTTCTATCTTATTCCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_k03.b1 MSMg01no083_k03.b1 CHROMAT_FILE:
MSMg01no083_k03.b1 PHD_FILE: MSMg01no083_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:24 2005
         (503 letters)



>mm_chr9_55058518_55059421
          Length = 904

 Score =  911 bits (471), Expect = 0.0
 Identities = 492/499 (98%), Gaps = 2/499 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcc-cagctgctcaagttccttataaagtggtatagtattctgttaacctatattg 65
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccacagctgctcaagttccttataaagtggtatagtattctgttaacctatattg 265

                                                                       
Query: 66  cccacccttatttaaattcaaatttctagattatttatacctcatataaggtataaatgt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cccacccttatttaaattcaaatttctagattatttatacctcatataaggtataaatgt 325

                                                                       
Query: 126 agactatattaggaaatatagacaaaaaagtttgtaaatatagcatagattcggcccctc 185
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agactatattaggaaataaagacaaaaaagtttgtaaatatagcatagattcggcccctc 385

                                                                       
Query: 186 ccccatttt-aaaaaaaatagctgcatttgactcattggatgaagagagaggtgatgact 244
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ccccattttaaaaaaaaatagctgcatttgactcattggatgaagagagaggtgatgact 445

                                                                       
Query: 245 ttatgtgtgtctggagctgtatctctgtcagtgcatggggacacatgagttgccttaggt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ttatgtgtgtctggagctgtatctctgtcagtgcatggggacacatgagttgccttaggt 505

                                                                       
Query: 305 acatccacttcctctatgttcatatttacacctcccttatcgtcagtgagaaacttggct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 acatccacttcctctatgttcatatttacacctcccttatcgtcagtgagaaacttggct 565

                                                                       
Query: 365 catagctcctcccacccaccccttctcctctgagagggggcccctccatacatacctccc 424
           || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 cagagttcctcccacccaccccttctcctctgagagggggcccctccatacatacctccc 625

                                                                       
Query: 425 ccaatccccgccccaaataccatcaagtctctgccagattaggtatttcctctcccactg 484
           |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ccaacccccaccccaaataccatcaagtctctgccagattaggtatttcctctcccactg 685

                              
Query: 485 aggccagactagctagcct 503
           |||||||||||||||||||
Sbjct: 686 aggccagactagctagcct 704


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 904
Length adjustment: 10
Effective length of query: 493
Effective length of database: 894
Effective search space:   440742
Effective search space used:   440742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)