BAC Information

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BAC

Clone NameMSMg01-083N09
Chromosome9 (Build37)
Map Location 52,523,535 - 52,675,633
singlet/doubletdoublet
Overlap geneGm1715
Upstream geneArhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik, Zc3h12c, LOC100042876, AI593442
Downstream geneDdx10, Exph5, Kdelc2, 4930550C14Rik, Atm, Npat, Acat1, Cul5, Rab39, EG434404, LOC100038958, Slc35f2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083N09.T7 (MSMg01no083_n09.b1)MSMg01-083N09.TJ (MSMg01no083_n09.g1)
ACCAG303850AG303851
length731722
length of high quality
(start - end)
370 (40 - 409)340 (68 - 407)
definitionCHROMAT_FILE: MSMg01no083_n09.b1 PHD_FILE: MSMg01no083_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:41 2005CHROMAT_FILE: MSMg01no083_n09.g1 PHD_FILE: MSMg01no083_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,523,535 - 52,523,901)(52,675,295 - 52,675,633)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTGTTATGCTTCTACTTAAATTGGGGGCCAAGAAATACTTCTGTGGGGAC
AGTAGTTGCCTTGTGCAATGTAGAATATAGAGAAATACTCCAGGCTTTTG
ACCCCTGGAAGTGGAAGTGGTCAGGTTTCCTTAAGATGTCAGTACTATGT
CCCCTACCATACCATGACAATAAACAAAATTGTCTTCAGTATTGTCTAGT
TGTCAAATGCCTGCCAAGGGAAGAGAAAGTATCCTCAGCAGAAACCATAG
AGCTAGATGGAGATTAATTTTGGTCCTCTCTAGAGTAAGAAATTCCAAAG
TTATAGATTTCTTTAACAGGCAAAATAAATATTTTTTACAAAATAAATAT
TTATGGGCACACCCATACCTATGCATATGGTTATTAATAAATTGTATGAT
GAATGGCTTGTCTTTTCTTTTTCTTTCTGTTTCTTTTGCTTTTTTTTCTT
TTATTTTTTTCCCTTTTTTTTTTTTTCTTCTTCTTTCTTTTTTTTCTTTT
TTTTTTTTTTTCTTTTCTTTTTTTCTTTTATTCTCTTTTCTTCCTTTTCT
TCTTACCTCTTCTGTCTCCTTCTGTTCTTTCTACTATTCTCGCTTTTCTT
TTGTTTTGATGCTTTTTATTTGTTTTTCTCCCCTATTTGTTTTCCTTTTG
TTCCCATTCTTTCTTTTTTCCTTTCATCCCG
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATAAAATGCCACAGGGAGCAGTTTTTAACCTCT
GAAAAGCTGTTAGTTACATAAGCCCTGGAAATGTGCTGTTTTGCATTTCA
CTCTACAGGCCTGGACCCCACACCCTCTCACCTGTGTGCTATCAGGCTTG
AGAGGGATTCTGTCAGACGCTCAGCCCACTCTACTCCTACTTCTATTGGT
AATTCATTTGAAGGCTTAGGGATGTGCCTCTGAGCTAATTCATAACAGAG
AATGGAGGTTAGTCACTAGGCAGGAAAAAAATTTCTCTAGAAGAAGTATT
TTTCTTTTCCTGGGATAAATATGACATTTGTCACAGATAATACGGAAGGA
TTTTAACCCACGACATATTTAAATCTTGAAAAAGTTTCTCTGTGTTTTTC
CCTCAGAGAGTTTATGCTCTTTGGATAGAGAATTAATGAAGATACATTTT
ACTATCAGGTTGTTTGTTAATGTCTTTTGAACACAGGTCATCCTCTTGTT
GTTTGCATTGCTGATTGTTTTTTTTGCTTGTTTTACCTCTCTTTTCCCGT
ACCCTGTTATCTCTATTATGTTGTTTTTTTTCTACCCGCCATCCTTTTCT
ATTGTAGCTCTCACTTATATTGTACTATTCTCTTTAATCGTTTTTTTTCT
TTTCTTTCTAATTTATTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_n09.b1 MSMg01no083_n09.b1 CHROMAT_FILE:
MSMg01no083_n09.b1 PHD_FILE: MSMg01no083_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:41 2005
         (370 letters)



>mm_chr9_52523332_52524101
          Length = 770

 Score =  694 bits (359), Expect = 0.0
 Identities = 365/367 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttgttatgcttctacttaaattgggggccaagaaatacttctgtggggacag 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttgttatggttctacttaaattgggggccaagaaatacttctgtggggacag 263

                                                                       
Query: 64  tagttgccttgtgcaatgtagaatatagagaaatactccaggcttttgacccctggaagt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tagttgccttgtgcaatgtagaatatagagaaatactccaggcttttgacccctggaagt 323

                                                                       
Query: 124 ggaagtggtcaggtttccttaagatgtcagtactatgtcccctaccataccatgacaata 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggaagtggtcaggtttccttaagatgtcagtactatgtcccctaccataccatgacaata 383

                                                                       
Query: 184 aacaaaattgtcttcagtattgtctagttgtcaaatgcctgccaagggaagagaaagtat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aacaaaattgtcttcagtattgtctagttgtcaaatgcctgccaagggaagagaaagtat 443

                                                                       
Query: 244 cctcagcagaaaccatagagctagatggagattaattttggtcctctctagagtaagaaa 303
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 444 cctcagcagaaaccatagagctagatggagattaagtttggtcctctctagagtaagaaa 503

                                                                       
Query: 304 ttccaaagttatagatttctttaacaggcaaaataaatattttttacaaaataaatattt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttccaaagttatagatttctttaacaggcaaaataaatattttttacaaaataaatattt 563

                  
Query: 364 atgggca 370
           |||||||
Sbjct: 564 atgggca 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no083_n09.g1 MSMg01no083_n09.g1 CHROMAT_FILE:
MSMg01no083_n09.g1 PHD_FILE: MSMg01no083_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:41 2005
         (340 letters)



>mm_chr9_52675095_52675834
          Length = 740

 Score =  648 bits (335), Expect = 0.0
 Identities = 338/339 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataaaatgccacagggagcagtttttaacctctgaaaagctgttagttacataagccctg 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ataaaatgtcacagggagcagtttttaacctctgaaaagctgttagttacataagccctg 480

                                                                       
Query: 61  gaaatgtgctgttttgcatttcactctacaggcctggaccccacaccctctcacctgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gaaatgtgctgttttgcatttcactctacaggcctggaccccacaccctctcacctgtgt 420

                                                                       
Query: 121 gctatcaggcttgagagggattctgtcagacgctcagcccactctactcctacttctatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gctatcaggcttgagagggattctgtcagacgctcagcccactctactcctacttctatt 360

                                                                       
Query: 181 ggtaattcatttgaaggcttagggatgtgcctctgagctaattcataacagagaatggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ggtaattcatttgaaggcttagggatgtgcctctgagctaattcataacagagaatggag 300

                                                                       
Query: 241 gttagtcactaggcaggaaaaaaatttctctagaagaagtatttttcttttcctgggata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gttagtcactaggcaggaaaaaaatttctctagaagaagtatttttcttttcctgggata 240

                                                  
Query: 301 aatatgacatttgtcacagataatacggaaggattttaa 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 aatatgacatttgtcacagataatacggaaggattttaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)