BAC Information

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BAC

Clone NameMSMg01-084O17
Chromosome9 (Build37)
Map Location 63,721,238 - 63,721,506
singlet/doubletsinglet
Overlap genenone
Upstream geneCalml4, Pias1, LOC100039976, Ppia-ps9_818.1, Lbxcor1, Map2k5, 2300009A05Rik, Iqch, LOC621763, 2310007F21Rik, Smad3, LOC100040009
Downstream geneSmad6, 2600006L11Rik, Lctl, Zwilch, Rpl4, Snapc5, Map2k1, Uchl4, Tipin, Dis3l, Megf11, Rab11a, AI115600, F730015K02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084O17.T7 (MSMg01no084_o17.b1)MSMg01-084O17.TJ (MSMg01no084_o17.g1)
ACCAG304642AG304643
length719731
length of high quality
(start - end)
271 (46 - 316)51 (75 - 125)
definitionCHROMAT_FILE: MSMg01no084_o17.b1 PHD_FILE: MSMg01no084_o17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:04 2005CHROMAT_FILE: MSMg01no084_o17.g1 PHD_FILE: MSMg01no084_o17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAATGCGCGGA
ATTCTTACTTGTCGCATGTTTGGACTTCTCCATTCCTCTCCAGATCCCTG
ACTCTTCCTTCATAGTCCATATCTCCTCTTCTCTCCTTGATATATTTATT
CCAGCTCGTGGGTTCTCCCTTCAGTTGTGTCTAATCTATTTTACACATAA
AAAGTGAGTTTTCCCCAATGATCTTTTTTCTTTCCATTTCTAAATATGTC
CTTCTTTTTAGAATCTGTTTTTGCTGTCAAAACAAAACAAAACAAAAACA
AACTAACAACAAAACAGAAAACTAAACAAAACACTTTTCTGTGGATGGGA
TTTCACGCCTTAAATCAGAACACTCAGGAGGCAACCACAGGTGGCTCTCT
GTGAGTTTGAGGCCCATGTTCTCCAGGAAGGGTGGTCTGTTTCCCTCTGT
CTCATCCCTTGCTGCGATAACCTCTTGGTCCATTGTTCTCCTCAGCTCCA
GTCTCTACTCTTCTCTGAGAACAGCTTCTCTGACCTCGGATTGACAGCTC
CAGATAGATCTCATCTGCTGCGTGTATGATTCTGAAACCTTAAAACTTGA
GATTCCCATGAAAGAACCATGACCCAAGCATATATACATTCCTAGCCTCC
TCTCTGGTACCATAGTCCATAATAAAGGATGATTCTTCTCCCTAAGACTA
GGTGCCCTTGTGTATTGAC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGGGCCAGCCTGAGCTGTAAGAGATA
CTGTTTCAACACACACACACACACACACACTCACACATACTCATACACAC
ACTCATACACACACACGGCTGGGATGAAGAGGCTGGATATGGTGACCAGT
GCTTGCTGCGCTCCAGCTACCACCTCTGTTGCTGGAGACAGGTGTGGGGG
CAGATGTCTAACCATGCCTTGGGTTTCAGGGGTTGTAAAAAAGGTTGTGC
ACACCATACAGACTCTGGGTCTGTTTCCTCAGCCAGTTTCCCTGGGAGTC
ACTTCCATTTAACAGGCCTCAAACTCCTCTATGCAGTGTGAAATCAATCT
CAATTCTTCTCTCCCTGAGAGCTTCGTGCCTTTCTTAGTTGGGCAACTGG
ACCTCTCTCGGGTCTGGCCTCTGGGCACAGGAGGATAGAATTCGAGCGAA
GAAGCTCTCACCAGAACATGTTTAGACTTCCTCCCCATGTGTTGTTTAAT
ATCACTCAATGTCCCCCTATGAACATAAGAATCTCTCTCCCACTTATGTC
TTGGTCTATAAACTCTGTTTATATTACTGATAGTTAAATATACCCTTAGT
TTCCCAATTTCTTGTAATCATCACTTCTGATTATCACTTTTGAATTGTTA
TTCCCATTCTTTTTCCCTTATTGTTCGGATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_o17.b1 MSMg01no084_o17.b1 CHROMAT_FILE:
MSMg01no084_o17.b1 PHD_FILE: MSMg01no084_o17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:04 2005
         (271 letters)



>mm_chr9_63721036_63721706
          Length = 671

 Score =  484 bits (250), Expect = e-141
 Identities = 265/270 (98%), Gaps = 2/270 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggaattcttacttgtcgcatgtttggacttctccattcctctcca-gatccctgactctt 61
           |||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 203 ggaattcttacttggcgtatgtttggacttctccattcctctccaagatccctgactctt 262

                                                                       
Query: 62  ccttcatagtccatatctcctcttctctccttgatatatttattccagctcgtgggttct 121
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 263 ccttcatagtccatatctcctcttctctccttgatatatttattc-agctcgtgggttct 321

                                                                       
Query: 122 cccttcagttgtgtctaatctattttacacataaaaagtgagttttccccaatgatcttt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cccttcagttgtgtctaatctattttacacataaaaagtgagttttccccaatgatcttt 381

                                                                       
Query: 182 tttctttccatttctaaatatgtccttctttttagaatctgtttttgctgtcaaaacaaa 241
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 382 tttctttccatttctaaatatgtccttctttttagaatctgtttttgttgtcaaaacaaa 441

                                         
Query: 242 acaaaacaaaaacaaactaacaacaaaaca 271
           ||||||||||||||||||||||||||||||
Sbjct: 442 acaaaacaaaaacaaactaacaacaaaaca 471


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space:   173444
Effective search space used:   173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)