Query= MSMg01no085_j07.b1 MSMg01no085_j07.b1 CHROMAT_FILE:
MSMg01no085_j07.b1 PHD_FILE: MSMg01no085_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:36:32 2005
(528 letters)
>mm_chr9_56221649_56222577
Length = 929
Score = 984 bits (509), Expect = 0.0
Identities = 524/529 (99%), Gaps = 1/529 (0%)
Strand = Plus / Plus
Query: 1 aatatataaatataaattaaaaaattaaaaccatcagattataatgccaaaattttcctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatatataaatataaattaaaaaattaaaaccatcagattataatgccaaaattttcctt 260
Query: 61 aagtgtgtcagatcagcaacatatgtgtaactccattttcaagtagagaaaagcaatgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtgtgtcagatcagcaacatatgtgtaactccattttcaagtagagaaaagcaatgaa 320
Query: 121 aatatactccaaagtgtcttagcaatggagtcagtttatttcccaaactaacccacaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatatactccaaagtgtcttagcaatggagtcagtttatttcccaaactaacccacaaac 380
Query: 181 tataagcattcagactgcttcatagaattacaaaaaagctttgcttcctattgaaacact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tataagcattcagactgcttcatagaattacaaaaaagctttgcttcctattgaaacact 440
Query: 241 taagaaaatatatcatcgtctttaattttcagaaacaactcattcttattataaactaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taagaaaatatatcatcgtctttaattttcagaaacaactcattcttattataaactaca 500
Query: 301 tacaaagtgccagatacattcataaatatctcaccttgggttttctaggcaagctaccaa 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tataaagtgccagatacattcataaatatctcaccttgggttttctaggcaagctaccaa 560
Query: 361 gaaacatccagcgcataagtcctgggttggacagacacctagaatgaagagggaaaaaaa 420
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 gaaacatctagcgcataagtcctgggttggacagacacctagaatgaagaggaaaaaaaa 620
Query: 421 aaa-gacatggtcaataaaactacgtctgagctggcatctcacttcctcacatcaggaaa 479
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaagacatggtcaataaaactacgtctgagctggcatctcacttcctcacatcaggaaa 680
Query: 480 ctttaactcccaaactctttctgtgatcacaatgttctttagacgactg 528
|||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 681 ctttaactcccaaactctttttgtgatcacaatgttctttagacgactg 729
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 929
Length adjustment: 10
Effective length of query: 518
Effective length of database: 919
Effective search space: 476042
Effective search space used: 476042
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no085_j07.g1 MSMg01no085_j07.g1 CHROMAT_FILE:
MSMg01no085_j07.g1 PHD_FILE: MSMg01no085_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:36:32 2005
(437 letters)
>mm_chr9_56308629_56309464
Length = 836
Score = 787 bits (407), Expect = 0.0
Identities = 428/435 (98%), Gaps = 1/435 (0%)
Strand = Plus / Minus
Query: 3 tctaggtgcctcatttttccctgagggtctaaagctgcttaaaaaatagagttcattcat 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tctaggtgcctcatttttccctgagggtctaaagctgcttaaaaaatagagttcattcat 577
Query: 63 ttaaaaattaatgtattagatttttagcaattatataatttacatgttttttggcacata 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ttaaaaattaatgtattagatttttagcaattatataatttacatgttttttggcacata 517
Query: 123 accaggtgggtataaatacaactgactttgctatgcttacacgtttaagtggaggaagtg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 accaggtgggtataaatacaactgactttgctatgcttacacgtttaagtggaggaagtg 457
Query: 183 gaagtacaaaggcttactacagcatcatctactcgctaagaactcttagctaagaacatt 242
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gaagtacaaaggcttacaacagcatcatctactcgctaagaactcttagctaagaacatt 397
Query: 243 cagtaggcggtaggcattaatcagcatgttttacagtggggataagaacactgccaatcc 302
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 396 cagtaggcggtaggcattaatcagtatgttttacagtggggataagaacactgctaatcc 337
Query: 303 tacttggcagttaaccgggcttcagttaaataatactgagtaaagaattcttttgctgta 362
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 336 tacttggcagttaaccgggcttcagttaaataagactgagtaaagaattcttttgctgta 277
Query: 363 ggtttttaaatgggatgagaagagacagagatgagaacaggtcatctgtgagggctgatg 422
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 276 ggtttttaaatgggatgagaagaga-agagatgagaacaggtaatctgtgagggctgatg 218
Query: 423 cacggagaggcaatc 437
|| ||||||||||||
Sbjct: 217 cagggagaggcaatc 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 836
Length adjustment: 9
Effective length of query: 428
Effective length of database: 827
Effective search space: 353956
Effective search space used: 353956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
