BAC Information

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BAC

Clone NameMSMg01-087K16
Chromosome9 (Build37)
Map Location 7,387,911 - 7,388,152
singlet/doubletsinglet
Overlap geneMmp1b
Upstream geneLOC100039400, LOC100039418, EG547034, Dync2h1, LOC100039658, Dcun1d5, Mmp13, Mmp12
Downstream geneMmp3, Mmp1a, Mmp10, Mmp8, Mmp27, Mmp20, Mmp7, LOC665057, LOC100039782, Tmem123, Birc2, Birc3, Yap1, EG665090, 9230110C19Rik, AK129341, LOC100039855, 1700018P22Rik, LOC665108, 1700128F08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087K16.T7 (MSMg01no087_k16.b1)MSMg01-087K16.TJ (MSMg01no087_k16.g1)
ACCAG306634AG306635
length708701
length of high quality
(start - end)
362 (46 - 407)244 (70 - 313)
definitionCHROMAT_FILE: MSMg01no087_k16.b1 PHD_FILE: MSMg01no087_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:52 2005CHROMAT_FILE: MSMg01no087_k16.g1 PHD_FILE: MSMg01no087_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:52 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCACTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCCGTTGGTGGTCTT
TTTGTCTTATTGACAGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT
TAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTC
TATTCAGGAATTTTTCCCATGTGCCCATATCTTCAAGGATTTTCCCCACT
TTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGAT
CCACTTATATCCCACCTTATTACAAGGAGATAAGTATGGATCAATTCGCA
TTCTTCTACACGATAACAACCAGTTGTGCCAGCACCTATTGTTGAAAATG
CTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGCCGAATATCACGTG
ACCATAGGTGTGTGGATTCATTTTCTGTTTTTTTCTAATTCTTTCCATTG
CTCTTCTTGCCTGTTTTTATACCTGTTATCTGCCGCCTTTACCATCTTTG
CTCTCGCTCTCACCTTCCTCCTTTCTTCTGTCTGATTCCCCCCCCACCTT
CTTTTGTA
AATGAAGTGGGAGGCCTGGCGNGCGCCTTTTCGTACCGTTGAGGTGAACT
ATAGAATTACANAAAAAAATCTTCTCTACATTGAAGAGGATGTTACAAAG
CCTGAGTCATATAGCCTCTGGCTTTTTAGAAGTAGAAGAAGTCTTATATA
AAGATGGAATTTCCTGACTAGTATGTTGGAGCAGGCAGGAAGGAGGTCAC
TGGTGATTTTCCCAGAGAAAAGCTTCAGCATGTCTAGCCTTCCTTTGCTG
TTGCTTCTCTGGGCTGCCAGCTCATACAGTTTCCCTGTGATTCAGGATGG
ACTCCAGAAAATTGCGTAGATTGTCTGGGTAAATAAATACTAAATTACAT
ATGTAATTTTCACGCCGCATCCTATATTATAGTGTGATTTCATGAATGGA
TGGATTTCTAACAGAAATGGTATTTGGCCAACATGTAACATTCTCAAAAA
TGTCTATAGTCAAATCTATATACCTCTTTCTGGTTGGGGTAGAGGGGACC
TGTGATGGTTTGTCTATCCTTGGACCAGGGAGCATCTTTATCTGGAGGTG
TGTTCCTGCTGTAATAGGCGTGACCCGTACGTTATGCTTGTGTTTCTGCC
TTTGTGCCCCCCTCACTATCCCCCCCACCCGCCTGGAAAGCAGTTTTCTT
TTTTTTTCCCACGGCAGCGTATGCCTTCCTCCTCTTTTCCCCTTCCCCCC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_k16.g1 MSMg01no087_k16.g1 CHROMAT_FILE:
MSMg01no087_k16.g1 PHD_FILE: MSMg01no087_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:52 2005
         (244 letters)



>mm_chr9_7387711_7388354
          Length = 644

 Score =  468 bits (242), Expect = e-136
 Identities = 242/242 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttctctacattgaagaggatgttacaaagcctgagtcatatagcctctggctttttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tcttctctacattgaagaggatgttacaaagcctgagtcatatagcctctggctttttag 383

                                                                       
Query: 61  aagtagaagaagtcttatataaagatggaatttcctgactagtatgttggagcaggcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aagtagaagaagtcttatataaagatggaatttcctgactagtatgttggagcaggcagg 323

                                                                       
Query: 121 aaggaggtcactggtgattttcccagagaaaagcttcagcatgtctagccttcctttgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aaggaggtcactggtgattttcccagagaaaagcttcagcatgtctagccttcctttgct 263

                                                                       
Query: 181 gttgcttctctgggctgccagctcatacagtttccctgtgattcaggatggactccagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gttgcttctctgggctgccagctcatacagtttccctgtgattcaggatggactccagaa 203

             
Query: 241 aa 242
           ||
Sbjct: 202 aa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)