BAC Information

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BAC

Clone NameMSMg01-088B13
Chromosome9 (Build37)
Map Location 102,525,102 - 102,525,336
singlet/doubletsinglet
Overlap geneCep63
Upstream geneEphb1, 9630041A04Rik, Ky, LOC664843
Downstream geneAnapc13, Amotl2, EG434510, Ryk, Slco2a1, Rab6b, Srprb, Trf, 1300017J02Rik, Topbp1, Cdv3, Bfsp2, Tmem108, 4932413F04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088B13.T7 (MSMg01no088_b13.b1)MSMg01-088B13.TJ (MSMg01no088_b13.g1)
ACCAG306942AG306943
length672790
length of high quality
(start - end)
236 (87 - 322)39 (148 - 186)
definitionCHROMAT_FILE: MSMg01no088_b13.b1 PHD_FILE: MSMg01no088_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:27 2005CHROMAT_FILE: MSMg01no088_b13.g1 PHD_FILE: MSMg01no088_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACGATCCGCGGAATTCTGTGTTCCTAATACTCAATACAGACTTAAGCAAA
AAGTGTTTGATGATCTGCCACCGCTTATCACTCCGGTCAAATACTAACAT
AGGGCCAACAGGGCCCTCATTCACTGAGGGAATACTAGGAAGCTGTCAAA
AGAGCATACATCTGTGGAGGGGCCTGTGATAAGGTGAAAACAGCTACAAA
GCAAGAAGAAGAAGTGTGTTCGCCTTTGGGTGCTTATTTACTGAAGAACA
AACTGAGAACTACTGCCTTTACGGAGGGAAGTGATCAGGTGGGGGAGTCA
GGGATAAAGCTAACTTTCTACTGAGCAGGTTTGCTCTTTTACAGGGACGA
TGACAGTGCTTTCTAACTACCACACAGAGAGGAAAGCAGCAGCACTGACC
GGGATCCTAGCACTGGGTAGGTGAAGCAGGAAGATCTTAAGTTCAAGGTC
ATCCTTGACTACAATAAAACCCAGCTAAAGCAAAACTAGGAGGAAATGAT
CATAAGTGTTGGTCTTGAAGGGTTCCTACTAACTAGAAACAAAACAATTT
CTGGTATCATACAAATGTTGGTGCTGGAGAGATGTCTCAGCGATTAACAG
TGCTGACTGCTCTTCTGAAGGTCGTGAGTTCAATTTCCAGCATCCTCATG
GTGGCTCAACAGCATCTGTGAT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTTCTATCAANTCACGATGAXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAT
TCTAGAAAAGGGTTGAAGCTTGCTAGCCACGCAGCATCCTCCCCCGCCCT
GGGATTCTGGGTTTCGTTATCCTCACGGTTTACTGCCCAGTAGTCAATCT
ACAAAAAGGGATGTGTCTAGGGATGAAAAGGCACAGGCTTCTTGCCTGCT
CCTGTTCTCGGATGCCCCTCGGCCTTCACGAAGGTTGCTGTTGAAAGTTT
GAGTCAAAGGTGTTAAAGAGCGAGCATGGTGCAAGGTGTGTTGTTTTTTG
AAATCATGAATGGTGGGCCTGACTGCATTCTTATTTACATCCCCCCCCCA
GGGTCACACATACGGTCAAGGTAGTATTCAACCCTGCTTCAAAACAAATG
ATTTTCCTTGAGGGGTGCGATTTCCTTTCAGGCCAAATTTCTGACCCTTT
TCCTGTACCCTTGAGTGCTTGTCTATGGTACTTACGGTTCAAAAGGTATA
ACTCTGACCTTGTCAAACCCAAAGCCTCTACCCTGCCTAAAGATCTGCTT
TTACAAGTATTTTTCCCTTTACTAATCCAATAACTCTTTAGAAAGGGCCT
ATGGGTCACCTTTTCAGTTAAGCCCGTTGGTCTCCTCTTTATATTTCCAG
CCCACCCTAATTGCTTTCCCCACCTATTTCGTTTGGTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_b13.b1 MSMg01no088_b13.b1 CHROMAT_FILE:
MSMg01no088_b13.b1 PHD_FILE: MSMg01no088_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:27 2005
         (236 letters)



>mm_chr9_102524902_102525537
          Length = 636

 Score =  455 bits (235), Expect = e-132
 Identities = 235/235 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaaatactaacatagggccaacagggccctcattcactgagggaatactaggaagctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaaatactaacatagggccaacagggccctcattcactgagggaatactaggaagctgt 260

                                                                       
Query: 61  caaaagagcatacatctgtggaggggcctgtgataaggtgaaaacagctacaaagcaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaaagagcatacatctgtggaggggcctgtgataaggtgaaaacagctacaaagcaaga 320

                                                                       
Query: 121 agaagaagtgtgttcgcctttgggtgcttatttactgaagaacaaactgagaactactgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaagaagtgtgttcgcctttgggtgcttatttactgaagaacaaactgagaactactgc 380

                                                                  
Query: 181 ctttacggagggaagtgatcaggtgggggagtcagggataaagctaactttctac 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttacggagggaagtgatcaggtgggggagtcagggataaagctaactttctac 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)