BAC Information

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BAC

Clone NameMSMg01-088H05
Chromosome9 (Build37)
Map Location 110,886,309 - 110,886,836
singlet/doubletsinglet
Overlap geneLrrc2
Upstream geneMtap4, Dhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1
Downstream geneRtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1, Lba1, Dclk3, LOC620615, Stac, 4930545L08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088H05.T7 (MSMg01no088_h05.b1)MSMg01-088H05.TJ (MSMg01no088_h05.g1)
ACCAG307203AG307204
length989678
length of high quality
(start - end)
52 (191 - 242)530 (56 - 585)
definitionCHROMAT_FILE: MSMg01no088_h05.b1 PHD_FILE: MSMg01no088_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:55 2005CHROMAT_FILE: MSMg01no088_h05.g1 PHD_FILE: MSMg01no088_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAACTACCCAATACAAAAAGAAAGNATCCNGCGNGNAATTCCCAAACTTT
ACTATAAAAAAACANGTCNNGTTACCTCCCAAGATANGCACGTAGGAAAA
CTAGTAGAAAAGACCTCTATACCTCTCACCACAATTCTCCAACCCTTAGG
GATAGTAGTCCCCTCCCCTAGAAATCCCCATAGNCATCTAGTAGTAGTAG
TAGTAGTAGTAGTAGTAGTAGTCGTAGTAGTAGTAGTAGTAGTAGTCGTC
CTCTATCACCCCACCCACCTACTAACCTCACACCTCCCTCATCACATATG
TCTCCCTCAGCACCCTCACTATATATCCACTATATTCTATCGCTCTTTCC
ACACACTTCTCATTTTCTCCTTCTCTTCATCCACCCACTACAACCACTAC
CAACACTCCTCTTCTTATTATTCACACACAAACACACCCACACCACCCTA
TCACACCACCACCTCACATTTTATTATACCCCCACCCCCCCCCCCCCCTC
ACACAACCACCCCTCGCACCACTTACAAACATCAACAACAAACAACTCCC
CACACCACACAAAAACATATAATACACCCCCCCCCATCCCACTCTCTCCC
ATATATCTACCATCTACACAACCTACACACCCTTTTTATTATACAATCCA
CAACTCACCCCTCACCACCTCCTTCTCACACCCTCCCCACTAATCATCAC
CCTACCCCTTCCCTCTTCATCCACAACACATCACACACTATCCACCACCC
CACACACACACAATCACCCTCTCATTACTTACATTATCACCTAACCTAAT
TATACCACCCACCCCACTCACTTTATAATATACAACACACACTACATCTC
TCAAATCTCACTCACATATAACAACATACCCACCCTCTCCAAACACATCT
CAACACATATTCAAAACTATATTTCTCTCCTCCTCCTCACTCTCACTCAC
TCAACTCTATCAAATCACCCACTCTCCTTCTACCTCCTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCAGGACAGCCAAGGCTACACAGAGAAACCCTGTTTCAAAATAAAC
AAACAAAAAAACCAAACCAAAACAAAACAAAAAAACCTGTTTCAAATTGA
TGATTAGTCCTAAACAAATGACTAAGATTGTATTTCATACTCAAGTACAG
GCTTTATATCAAGATTTGAAAACTAAAATGTGAAAAGATGGAAGGGTAGA
ATTTCATACAAATGGACTTCTTAATTTATGTAAATTCTATTTTAATAAAA
CCAGCCTTTGCGTAAAAGCCTTGTTCCACGTGTGTTCCTGTGTGCGGTGT
ATGTGTGTGTCCCAGAGATAGGCTCGGGGTGTCTTCCTTACTTCACCGCC
TTGTCGTTTGTTACTTTTCTTACTATTGACATGGTGTCTCTTGCTGAACT
TGTAGATTATTGTTCTGGCCACATACACACAAACTGGCCAGTGACTGTCT
GGGATCTGCCCGTCTCAGCCCCACCCCCTACCCCCGCGCTTGTGCAGGAG
GGACTACATGACTTCACGCCTTGCTTTTCACTCTTGCTGCAGATCTGAAC
TTGCGCCCTTGTACCAGAGTGGTACTTTCATCTGAGACTTCTCCCCAACT
CCCTACCCAATTACACTTTTTAAGACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_h05.g1 MSMg01no088_h05.g1 CHROMAT_FILE:
MSMg01no088_h05.g1 PHD_FILE: MSMg01no088_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:55 2005
         (530 letters)



>mm_chr9_110886109_110887038
          Length = 930

 Score =  986 bits (510), Expect = 0.0
 Identities = 524/530 (98%), Gaps = 4/530 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagccaaggctacacagagaaaccctgtttcaaaataaacaaacaaa--aaaacc 58
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||  
Sbjct: 201 caggacagccaaggctacacagagaaaccctgtttcaaaataaacaaacaaacaaaaa-- 258

                                                                       
Query: 59  aaaccaaaacaaaacaaaaaaacctgtttcaaattgatgattagtcctaaacaaatgact 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aaaccaaaacaaaacaaaaaaacctgtttcaaattgatgattagtcctaaacaaatgact 318

                                                                       
Query: 119 aagattgtatttcatactcaagtacaggctttatatcaagatttgaaaactaaaatgtga 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aagattgtatttcatactcaagtacaggctttatatcaagatttgaaaactaaaatgtga 378

                                                                       
Query: 179 aaagatggaagggtagaatttcatacaaatggacttcttaatttatgtaaattctatttt 238
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 379 aaagatggaagggtagaatttcatacaaatggacttcttaatgtatgtaaattctatttt 438

                                                                       
Query: 239 aataaaaccagcctttgcgtaaaagccttgttccacgtgtgttcctgtgtgcggtgtatg 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aataaaaccagcctttgcgtaaaagccttgttccacgtgtgttcctgtgtgcggtgtatg 498

                                                                       
Query: 299 tgtgtgtcccagagataggctcggggtgtcttccttacttcaccgccttgtcgtttgtta 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgtgtgtcccagagataggctcggggtgtcttccttacttcaccgccttgtcgtttgtta 558

                                                                       
Query: 359 cttttcttactattgacatggtgtctcttgctgaacttgtagattattgttctggccaca 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cttttcttactattgacatggtgtctcttgctgaacttgtagattattgttctggccaca 618

                                                                       
Query: 419 tacacacaaactggccagtgactgtctgggatctgcccgtctcagccccaccccctaccc 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tacacacaaactggccagtgactgtctgggatctgcccgtctcagccccaccccctaccc 678

                                                             
Query: 479 ccgcgcttgtgcaggagggactacatgacttcacgccttgcttttcactc 528
           ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ccgcgcttgcgcaggagggactacatgacttcacgccttgcttttcactc 728


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)