Query= MSMg01no088_l06.b1 MSMg01no088_l06.b1 CHROMAT_FILE:
MSMg01no088_l06.b1 PHD_FILE: MSMg01no088_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:16 2005
(487 letters)
>mm_chr9_57413508_57414394
Length = 887
Score = 717 bits (371), Expect = 0.0
Identities = 374/375 (99%)
Strand = Plus / Minus
Query: 109 tgagccatggctccagacccactttcaaacttaagacaatgttcctgtcctacagtaagt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 tgagccatggctccagacccactttcaaacttaagacaatgttcctgtcctacagtaagt 828
Query: 169 tctaccaggtcctcaaactggatgtggtgggacgcacattccagcactctggaaatggag 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 tctaccaggtcctcaaactggatgtggtgggacgcacattccagcactctggaaatggag 768
Query: 229 gcagaagaattaggagttcaaggacagcctctgttacacagcaaattagagaccagcctg 288
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 767 gcagaagaattaggagttcaaggacagcctcagttacacagcaaattagagaccagcctg 708
Query: 289 ggataaatgacgccctaactcaaagggtctctttgtgattctgagaatttccaaatctca 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 ggataaatgacgccctaactcaaagggtctctttgtgattctgagaatttccaaatctca 648
Query: 349 gtcaagctggaggcgaccctttctgggaagtggcacaggccttagtgtctatggagggaa 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 gtcaagctggaggcgaccctttctgggaagtggcacaggccttagtgtctatggagggaa 588
Query: 409 cctcaggtcactgtttgcacaaatcactttgctgtcatcatcatccttcacacaggaggg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 cctcaggtcactgtttgcacaaatcactttgctgtcatcatcatccttcacacaggaggg 528
Query: 469 aaatgttctgcatcc 483
|||||||||||||||
Sbjct: 527 aaatgttctgcatcc 513
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space: 418329
Effective search space used: 418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no088_l06.g1 MSMg01no088_l06.g1 CHROMAT_FILE:
MSMg01no088_l06.g1 PHD_FILE: MSMg01no088_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:16 2005
(513 letters)
>mm_chr9_57376131_57377043
Length = 913
Score = 930 bits (481), Expect = 0.0
Identities = 503/513 (98%), Gaps = 6/513 (1%)
Strand = Plus / Plus
Query: 1 acttacagagccgggcacggtggcgcatgcctttaatcccagcactcgggaggcagaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 acttacagagccgggcacggtggcgcatgcctttaatcccagcactcgggaggcagaggc 266
Query: 61 aggcggatttctgagtttgaggccagcctaatctacaaagtgagttccaggacaaccagg 120
|||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 267 aggcagatttctgagttcgaggccagcctaatctacaaagtgagttccaggacagccagg 326
Query: 121 gctatacagagaaaccctgtctcgaaaaaccaaaaaggaaaattaaaaaagaagaagaag 180
||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 327 gctatacagagaaaccctgtctcgaaaaaccaaaaaggaaaattaaaaa-----aa-aag 380
Query: 181 aagaagaagaattcacttacagtgcaggctgaccttgaaatcagcacaggcaacacagca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagaagaagaattcacttacagtgcaggctgaccttgaaatcagcacaggcaacacagca 440
Query: 241 aaatctgtctcaaaaatgaacaaaaagacaagttactgcactagaaaacatgtgtcaaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatctgtctcaaaaatgaacaaaaagacaagttactgcactagaaaacatgtgtcaaac 500
Query: 301 agtctgtacattttgcccccttctgctgttttctactcttctttttgccaatgaatgcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtctgtacattttgcccccttctgctgttttctactcttctttttgccaatgaatgcat 560
Query: 361 tagggacaggataatagcattcacagttgagtggtcttccactattgacgtcattgctct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagggacaggataatagcattcacagttgagtggtcttccactattgacgtcattgctct 620
Query: 421 tttcctttgtagctgtctgttccattcgctgctattctcatgggtcacacgagacagatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttcctttgtagctgtctgttccattcgctgctattctcatgggtcacacgagacagatg 680
Query: 481 aggagtttgatgctcgctgggtgacatacttca 513
|||||||||||||||||||||||||||| ||||
Sbjct: 681 aggagtttgatgctcgctgggtgacatatttca 713
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space: 454209
Effective search space used: 454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
