BAC Information

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BAC

Clone NameMSMg01-088M07
Chromosome9 (Build37)
Map Location 54,450,368 - 54,450,717
singlet/doubletsinglet
Overlap geneIdh3a
Upstream geneCul5, Rab39, EG434404, LOC100038958, Slc35f2, Sln, LOC100038996, Elmod1, Tnfaip8l3, Cyp19a1, LOC100039064, Gldn, Dmxl2, 4933412E14Rik, Cib2
Downstream geneAcsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2, C630028N24Rik, AY074887, Psma4, Chrna5, Chrna3, Chrnb4, EG640554, LOC664897, 1700071A11Rik, Ube2q2, Fbxo22, Nrg4, AI118078, Etfa, LOC546133, Isl2, Zfp291
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088M07.T7 (MSMg01no088_m07.b1)MSMg01-088M07.TJ (MSMg01no088_m07.g1)
ACCAG307438AG307439
length680767
length of high quality
(start - end)
350 (128 - 477)39 (134 - 172)
definitionCHROMAT_FILE: MSMg01no088_m07.b1 PHD_FILE: MSMg01no088_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:22 2005CHROMAT_FILE: MSMg01no088_m07.g1 PHD_FILE: MSMg01no088_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAGGCCATCCAGAGCTAGACAGCAAGACCTTGCCTGTCTTA
AAACAAGGCAGTAAAGAATTCACCGAAATGGCCACTCCCTTAAGGGAAGG
CTCTTATTGTAAATAAGAAAGAGACGTTTCCAGAGGCACCTGGAAGAGTC
CAGAGCAGAGGAAAAAAGGAAACATTGTGGTCATGGCCAGGGCTATCTTT
GAGAGAAGAGAAGTAAGAGAGAACAGTAGAAATAGTAAGAGATGGGGGCA
GGAAGAGTGAGTAGTGCAATAAGGTTGGCAGGCAGAGGCAGGGAAACAGG
GAAATGGTATCTGGGAGGAAGGAGGCCAGGAAGTGAAGAGCCAGGATGCT
CTGTGAGGGCTTTGAGATGCACAACAGGCACTAGTGAGTGGGCTGAGGGA
CTCTGAGATGTAACTACAGGAGTGAGTCAGTGGGGAGCCACGTCCTTTGC
AAGCGCCTGAGGAATGAATGCTGGCTTTTATCTAACCACCAAAAATCCTT
CCTTGGACTCATTGCTGCCTGGATATACTGACCTAAGATACACCTCTCAA
GAGTAAGACTCCTTATAGAGCCGGATGGTAGTCCAAACTCTCCCCTTTGT
TCAGACTATTGACCATTACAATACTGACTG
GTGGGGGCGTGGGTGTTGGCGGTTTTGGTGGTGGCGCCTCCTTTTNCCCT
ATTTTTTTCTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGTTCTGTAC
CCCATTTTTGATAGGGTTATTTTGTTACAAGAAGAATAAGTTCTTGAGTT
CTTTGTATATATTGGATATTAGTCCCCTATCTGATTTAGGATTGGTAAAG
ATACTTTCCCAATCTGTTGGTGGCCTCTTTTGTCTTATTGACGGTGTCTT
TTGCCTTACAGAAGCTTTGCAATTTTATGAGGTACCATTTGTCAATTCTT
GACCTTACAGGACAAGCCATTGGTGTTTTGTTCACGAAATTTTCCCCTGT
GCCCATATCTTTGAGTTTTTTTCCCACTTTCCCCTCTATAAGTTTCAGTG
TCTTTGGTTTTATGTGGAGTCCCCCCAAATAATTATACTTTTTTATTGTA
AAAGGTATATAAGAGTACATCTTATTTGAATTTTATTTACATGCTTACTG
TATTGTTTGAGCCTCTCCCCTTAGTTGTTGATTTGTCTGGTATCTTATTT
CCTTTGAGTTGTCTTTTAGCTTCCTACATCTTTTTATTAATTGAAATTAT
GAATAAATGGTTTCAATTTCATAATTCTATACAATCTTATTAATTATATA
TTTATACTGATTAGAATATTGTTAATTTTTATCATGTTAATTTTTTTTCA
TATATCGAAACATGTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_m07.b1 MSMg01no088_m07.b1 CHROMAT_FILE:
MSMg01no088_m07.b1 PHD_FILE: MSMg01no088_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:22 2005
         (350 letters)



>mm_chr9_54450168_54450917
          Length = 750

 Score =  654 bits (338), Expect = 0.0
 Identities = 347/350 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggccactcccttaagggaaggctcttattgtaaataagaaagagacgtttccagaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 atggccactcccttaagggaaggctcttattgtaaataagaaagagacgtttccagaggc 491

                                                                       
Query: 61  acctggaagagtccagagcagaggaaaaaaggaaacattgtggtcatggccagggctatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 acctggaagagtccagagcagaggaaaaaaggaaacattgtggtcatggccagggctatc 431

                                                                       
Query: 121 tttgagagaagagaagtaagagagaacagtagaaatagtaagagatgggggcaggaagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tttgagagaagagaagtaagagagaacagtagaaatagtaagagatgggggcaggaagag 371

                                                                       
Query: 181 tgagtagtgcaataaggttggcaggcagaggcagggaaacagggaaatggtatctgggag 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tgagtagtgcaataagggtggcaggcagaggcagggaaacagggaaatggtatctgggag 311

                                                                       
Query: 241 gaaggaggccaggaagtgaagagccaggatgctctgtgagggctttgagatgcacaacag 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 310 gaaggaggccaggaagtgaagagccaggatgctctgtgagggctttgagatgtagaacag 251

                                                             
Query: 301 gcactagtgagtgggctgagggactctgagatgtaactacaggagtgagt 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gcactagtgagtgggctgagggactctgagatgtaactacaggagtgagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space:   252681
Effective search space used:   252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)