Query= MSMg01no088_p05.b1 MSMg01no088_p05.b1 CHROMAT_FILE:
MSMg01no088_p05.b1 PHD_FILE: MSMg01no088_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:35 2005
(639 letters)
>mm_chr9_72247719_72248756
Length = 1038
Score = 1081 bits (559), Expect = 0.0
Identities = 616/635 (97%), Gaps = 5/635 (0%)
Strand = Plus / Plus
Query: 7 gaattctaaaatcctgttgtgattaaaaaaaaaagt-ccatttggggactgacatctttc 65
|||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 207 gaattctaaaattctgttgtgattaaaaaaaaa-gttccatttggggactgacatctttc 265
Query: 66 tgcaagacagcattctgagtatcaaacgttctatgtatcaactcctctttctgctcatgt 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tgcaagacagcattctgagtatcaaacgttctatgtatcaactcctctttctgctcatgt 325
Query: 126 ttgtaactaaccacactcctcccaacacacaggagagcttatgcagatgggcccagaagg 185
||||||||||||||| ||||||| |||||| |||||||||||||| ||| ||||||||||
Sbjct: 326 ttgtaactaaccacagtcctcccgacacacgggagagcttatgcaaatgagcccagaagg 385
Query: 186 aagtctgtactcacaaagggaatgaagtaaacacattaactttttttttctcaataccac 245
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 386 aagtctgtactcacaaagggaatgaagtaaacacattaactttttttt-ctcaataccac 444
Query: 246 ctgtgttgtaatgaaaggaaaaggcaaaatgaggtgcagcacaaaataaccaggagaaac 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgtgttgtaatgaaaggaaaaggcaaaatgaggtgcagcacaaaataaccaggagaaac 504
Query: 306 cagccctgctctgaagcagttatgctctgaaatgctcgtcaagtgcctcaaaaacagaga 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cagccctgctctgaagcagttatgctctgaaatgctcgtcaagtgcctcaaaaacagaga 564
Query: 366 ttcaaatttagatttgaattttttttatgggttaatttgaggaaaactggcatcttcaga 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttcaaatttagatttgaattttttttatgggttaatttgaggaaaactggcatcttcaga 624
Query: 426 cagtgagttgtccacccgctcgcacatacgctggctgcacatatggagtcaggtgttcgt 485
|||||||| |||||||| |||||||||| |||||||||||||| ||||||||||| ||||
Sbjct: 625 cagtgagtcgtccacccactcgcacatatgctggctgcacatacggagtcaggtgctcgt 684
Query: 486 aatggcctctaaaggttttagttcttggggttagaatcgacagcagggacagagagggat 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aatggcctctaaaggttttagttcttggggttagaatcgacagcagggacagagagggat 744
Query: 546 ggtcttgctgctgaccccagcctgcacatagggtggctctcagctgccctcaacctca-c 604
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
Sbjct: 745 ggtcttgctgctgaccccagcatgcacatagggtggctcacagctgccctcaacctcaac 804
Query: 605 ttcttctggcccctgcacacacacacacacacaca 639
| ||||||||||||||||||| |||||||||||||
Sbjct: 805 t-cttctggcccctgcacacatacacacacacaca 838
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1038
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1028
Effective search space: 646612
Effective search space used: 646612
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no088_p05.g1 MSMg01no088_p05.g1 CHROMAT_FILE:
MSMg01no088_p05.g1 PHD_FILE: MSMg01no088_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:35 2005
(490 letters)
>mm_chr9_72327351_72328240
Length = 890
Score = 924 bits (478), Expect = 0.0
Identities = 487/490 (99%)
Strand = Plus / Minus
Query: 1 cttttatttttattatgttgttgattatatgttaaattgatatatatttgaaaaggataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 cttttatttttattatgttgttgattatatgttaaattgatatatatttgaaaaggataa 631
Query: 61 tttaattgattagcaacacataagtaatcaaatgagttttttaatgaatataattttctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tttaattgattagcaacacataagtaatcaaatgagttttttaatgaatataattttctt 571
Query: 121 tctgattaatttagactctgcatgtaactagcaaaagactgaggtgtgtgaggtgttttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tctgattaatttagactctgcatgtaactagcaaaagactgaggtgtgtgaggtgttttt 511
Query: 181 ttttatatataagactgagtttttaattatctaaaagtattgtattcgttagcagcagtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ttttatatataagactgagtttttaattatctaaaagtattgtattcgttagcagcagtg 451
Query: 241 cctctaaaattactgaaattgtgaggatccacctgtgctgttgggacaaaaaccagaaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 cctctaaaattactgaaattgtgaggatccacctgtgctgttgggacaaaaaccagaaca 391
Query: 301 attggaatgagtaagcatagttactgtgaactgtcattcggctgtgaaatgaatacgggt 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 390 attggaatgagtaagcatagttactgtgaactgtcatttggctgtgaaatgaatacgggt 331
Query: 361 gtgcactatggttagctgcgactccaatctggctcccgagcccctctgtgatagcagtgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gtgcactatggttagctgcgactccaatctggctcccgagcccctctgtgatagcagtgt 271
Query: 421 ctccatttgaaaattagagtttgtcacatgatgtcttgaacctagctaacatatcacaaa 480
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 270 ctccatttgaaaattagagtttgtcaaatgatgtcttgaacctagctaatatatcacaaa 211
Query: 481 aggctgacag 490
||||||||||
Sbjct: 210 aggctgacag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
