BAC Information

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BAC

Clone NameMSMg01-089G24
Chromosome9 (Build37)
Map Location 55,330,071 - 55,330,556
singlet/doubletsinglet
Overlap geneEtfa
Upstream geneDmxl2, 4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2, C630028N24Rik, AY074887, Psma4, Chrna5, Chrna3, Chrnb4, EG640554, LOC664897, 1700071A11Rik, Ube2q2, Fbxo22, Nrg4, AI118078
Downstream geneLOC546133, Isl2, Zfp291, LOC664980, 4930563M21Rik, LOC664995, LOC665005, Rcn2, Pstpip1, Tspan3, C230081A13Rik, Hmg20a, LOC100039535
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089G24.T7 (MSMg01no089_g24.b1)MSMg01-089G24.TJ (MSMg01no089_g24.g1)
ACCAG307936AG307937
length698700
length of high quality
(start - end)
486 (61 - 546)350 (56 - 405)
definitionCHROMAT_FILE: MSMg01no089_g24.b1 PHD_FILE: MSMg01no089_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:14 2005CHROMAT_FILE: MSMg01no089_g24.g1 PHD_FILE: MSMg01no089_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCGCTATACGACTCCTATATTCAGAGATCCGCGGAATTCTGCAGGGT
GTCTTTATTGAATACTTACTGGAGCTACTATTTTTCCTGTCTGACCAACT
TGCATGTCATTGGGAACAAAGCCAGCATCAACAGCAGCTCGGGAAGCACC
AACTGAAAGGGAGGAAGTGTCATATTTTCAAGCTCTATTATTCAGCTAGT
GAGACAGTCACCAACAACTACAAAATAACATCCTAATATTTTACAGTCAA
AAAGTATTGTATACAGAACTCACTTTTGAAAAAGAAAATCCTGATTAATG
ATTTGTAACTGATCAAGGATTCTAAACACTAAATACAAGTACATTTTTCA
AGAAAATAACTTTCATTGTATGCTATACTCACAAATTTCTTTGTTTTTGT
TTGTTCGCTTTGAGACAGGGTCTCTCTATGTAGTCCTGGCTATCCCAGAG
CTCACTATGTAGACCACATTGGCCTTGAACTCACAGAGATCCTCCTGTCT
AGGCTTTCTGCATATTTGAAGGCATGCACCACTGCTCCAGGTATAACAAA
CGCTGCATAATATCATTATCTTTCATGATCTGATAACACCATACTCCACG
CAAGATTGAGGTTTAACAAGTATCCCATACTACACTAACAAACAAAAATG
TAACCGTTTTCTTCTCCACAGAAGAACTATTCTTACAGCATAAGCCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCATATTTTTGAATCAGCAAAATTGTTATTGTGAAAATGGCTGTA
TTAATAGAAGCTATCTATAAACCCAGTATAATTCTCCAACAAAATTCTAA
TGAGTTTCTTCACTGAAATTAAAAAAATAATCCTAAAATTCATATGAAAG
CATAGAAGACACAGAAACAGCTAAGGAATCCTGATCAAAAAGAACAATGC
TAGAGGTATCACTGATGTGATTTCAAGGTGATCAAAAGAAAGGGCACTGA
CATAAAGACTGCCACAGCAGGCGAGGGACATGGGTCCACAGGGAGTTTTT
TTTGCCCCCCCCCCCCATGACTTCTGCTGTGTCTGGAACCCATGTGAAAA
ACCACACAATATATAAAAATTTCTAATTGCTGCACTTTTACCAAGAGATG
GCAGGCCAACAGAGGAAAGACCCTGCCTCAAGCAAGATAGTAGGTAAGAA
CCAACTCCTGAAAGTTACTCTCCTGCTCTTCACACATGCGTCAAGGCTTA
CATACTACTACATCCACACACAACAAATGAATTTTTCTAATCCTTAAAAG
ACAAATAACTCCGCGTACCATTAAACCGATTTTAGACCCCCTTTCTTGAT
TTTTGCACTGATGCTCAAACATTACCGCATCATAAAACGTTTTCCCCACT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_g24.b1 MSMg01no089_g24.b1 CHROMAT_FILE:
MSMg01no089_g24.b1 PHD_FILE: MSMg01no089_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:14 2005
         (486 letters)



>mm_chr9_55329871_55330756
          Length = 886

 Score =  917 bits (474), Expect = 0.0
 Identities = 483/486 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatacttactggagctactatttttcctgtctgaccaacttgcatgtcattgggaacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatacttactggagctactatttttcctgtctgaccaacttgcatgtcattgggaacaaa 260

                                                                       
Query: 61  gccagcatcaacagcagctcgggaagcaccaactgaaagggaggaagtgtcatattttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccagcatcaacagcagctcgggaagcaccaactgaaagggaggaagtgtcatattttca 320

                                                                       
Query: 121 agctctattattcagctagtgagacagtcaccaacaactacaaaataacatcctaatatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agctctattattcagctagtgagacagtcaccaacaactacaaaataacatcctaatatt 380

                                                                       
Query: 181 ttacagtcaaaaagtattgtatacagaactcacttttgaaaaagaaaatcctgattaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttacagtcaaaaagtattgtatacagaactcacttttgaaaaagaaaatcctgattaatg 440

                                                                       
Query: 241 atttgtaactgatcaaggattctaaacactaaatacaagtacatttttcaagaaaataac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 441 atttgtaactgatcaaggattctaaacactaaatacaagtacatttttcaagaaaataat 500

                                                                       
Query: 301 tttcattgtatgctatactcacaaatttctttgtttttgtttgttcgctttgagacaggg 360
           ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 501 tttcattgtatgctatactcacaaatttctttgtttttgtttgtttgttttgagacaggg 560

                                                                       
Query: 361 tctctctatgtagtcctggctatcccagagctcactatgtagaccacattggccttgaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctctctatgtagtcctggctatcccagagctcactatgtagaccacattggccttgaac 620

                                                                       
Query: 421 tcacagagatcctcctgtctaggctttctgcatatttgaaggcatgcaccactgctccag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcacagagatcctcctgtctaggctttctgcatatttgaaggcatgcaccactgctccag 680

                 
Query: 481 gtataa 486
           ||||||
Sbjct: 681 gtataa 686


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)