Query= MSMg01no089_o19.b1 MSMg01no089_o19.b1 CHROMAT_FILE:
MSMg01no089_o19.b1 PHD_FILE: MSMg01no089_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:54 2005
(273 letters)
>mm_chr9_72942686_72943364
Length = 679
Score = 429 bits (222), Expect = e-125
Identities = 263/280 (93%), Gaps = 8/280 (2%)
Strand = Plus / Plus
Query: 1 ggcacactgaattaaactgaaacactgat-gcctcctctctgggcactactgacgtcaca 59
||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||
Sbjct: 201 ggcacactgaattaaactgaaacactg-tcgcctcctctctgggcactactgaagtcaca 259
Query: 60 ctgttgtcatg------tatcctcaaattctccaaatcctgaatggccaaaaaaattacg 113
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 260 ctgttgtcatgtatatttatcctcaatttctccaaatcctgaatggccaaaaaaattacg 319
Query: 114 aagggcaaaagtcactgtctttcttcccacattgttaccccagtgatttctgtcttccag 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aagggcaaaagtcactgtctttcttcccacattgttaccccagtgatttctgtcttccag 379
Query: 174 aatcccctattttgaaaccagtgctgccaacggtacaaacataatccacgcgattgatat 233
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||
Sbjct: 380 aatcccctattttgaaaccagtgctgccaacgggacaaacataagccacgcgattgagat 439
Query: 234 gctcctggacctgatcatgattcgtatggagcgttgtgtg 273
|||||||||||||||||||| || |||||||| ||||||
Sbjct: 440 gctcctggacctgatcatgaagcggatggagcggtgtgtg 479
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 679
Length adjustment: 9
Effective length of query: 264
Effective length of database: 670
Effective search space: 176880
Effective search space used: 176880
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no089_o19.g1 MSMg01no089_o19.g1 CHROMAT_FILE:
MSMg01no089_o19.g1 PHD_FILE: MSMg01no089_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:55 2005
(449 letters)
>mm_chr9_73067076_73067924
Length = 849
Score = 567 bits (293), Expect = e-166
Identities = 328/347 (94%), Gaps = 17/347 (4%)
Strand = Plus / Minus
Query: 1 ttccttcaacattcacaaaataatttcacccaactaaactacactaggctgggattaaac 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 338 ttccttcaacattcacaaaataatttcaccaaactaaactacactaggctgggattaaac 279
Query: 61 ccaggctcttgtgcatgttaaacaagcactctcaccactgcgctgcaagcctaggctcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ccaggctcttgtgcatgttaaacaagcactctcaccactgcgctgcaagcctaggctcta 219
Query: 121 tttaagcttttgattcttacacacacacacacacatacacacaccacaaaaaacaaaaaa 180
|||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 218 tttaagcttttgattcttacacac------------acacacaccacaaaaaa-aaaaaa 172
Query: 181 caaacaaacaaacaaaaaacctatcaccaggcagtggtggcacatgcctttaatcccaac 240
||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 -aaa-aaa-aaa-aaaaaacctatcaccaggcagtggtggcacatgcctttaatcccaac 116
Query: 241 actttggagacagaggcaggcagatttctgagttcgagaccagcctggtctacagtgagt 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 actttggagaccgaggcaggcagatttctgagttcgagaccagcctggtctacagtgagt 56
Query: 301 tccaggacatccaggactgcacagagaaaccttgtcttgaaaaacca 347
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55 tccaggacatccaggactgcacagagaaaccttgtcttgaaaaacca 9
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space: 368321
Effective search space used: 368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
