Query= MSMg01no090_d24.b1 MSMg01no090_d24.b1 CHROMAT_FILE:
MSMg01no090_d24.b1 PHD_FILE: MSMg01no090_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:21 2005
(492 letters)
>mm_chr9_97271924_97272818
Length = 895
Score = 891 bits (461), Expect = 0.0
Identities = 482/489 (98%), Gaps = 3/489 (0%)
Strand = Plus / Plus
Query: 7 gaattcattaaactgtgc-catattaccattatctaattctaaaa-atatgtcacctcca 64
||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 207 gaattcattaaactgagcaaatattaccattatctaattctaaaacatatgtcacctcca 266
Query: 65 aaaaaa-atcaattagaactcattttctcctctattcccccagccctcatggaacaatct 123
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aaaaaacatcaattagaagtcattttctcctctattcccccagccctcatggaacaatct 326
Query: 124 ttctgacttatcatttacttattttataaatggaataatacacagtctttttgggtcttg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ttctgacttatcatttacttattttataaatggaataatacacagtctttttgggtcttg 386
Query: 184 tttaacttagcatgtttccagggttaatgttataccaaatatgagatttcgttgtgtatc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tttaacttagcatgtttccagggttaatgttataccaaatatgagatttcgttgtgtatc 446
Query: 244 tgtgcatgtgtgcatacaagttcatatacacatacagatatgtggagatgtgcttgcctg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tgtgcatgtgtgcatacaagttcatatacacatacagatatgtggagatgtgcttgcctg 506
Query: 304 tatgtgcacatctggacgtgaaagattgctcctagccatagcctgagaagcttctttttg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tatgtgcacatctggacgtgaaagattgctcctagccatagcctgagaagcttctttttg 566
Query: 364 cagaggctaatccttttgcagagattcagaaccagtcacagtgttaagaatatgcgagtc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 cagaggctaatccttttgcagagattcagaaccagtcacagtgttaagaatatgcgagtc 626
Query: 424 tgagtgatcagccacaaatgggtcatccatgtcaacttcccctaactcaagactcaggag 483
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 627 tgagtgatcagccacaaatgggtcatccatgtcaactttccctaactcaagactcaggag 686
Query: 484 cattgaaga 492
|||||||||
Sbjct: 687 cattgaaga 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 895
Length adjustment: 10
Effective length of query: 482
Effective length of database: 885
Effective search space: 426570
Effective search space used: 426570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no090_d24.g1 MSMg01no090_d24.g1 CHROMAT_FILE:
MSMg01no090_d24.g1 PHD_FILE: MSMg01no090_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:21 2005
(295 letters)
>mm_chr9_97411261_97411961
Length = 701
Score = 526 bits (272), Expect = e-154
Identities = 289/298 (96%), Gaps = 6/298 (2%)
Strand = Plus / Minus
Query: 1 cagaagagaaactcttggagatgaatgggcatgtgtcaggatttaaagggctggcctaga 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 cagaagagagactcttggagatgaatgggcatgtgtcaggatttaaagggctggcctaga 439
Query: 61 gctaaggataagcaaaaacaacaaagaatcctcaataaaacagaaagccaaacctcagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gctaaggataagcaaaaacaacaaagaatcctcaataaaacagaaagccaaacctcagca 379
Query: 121 agtgccaagtgccagggatcatctggccattcagttaaagtcagcaatcttacagagcaa 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 agtgccaagtgccagggctcatctggccattcagttaaagtcagcaatcttacagagcaa 319
Query: 181 gggcagaagccagagcatcaaccccaaggttcag------aaaattgtcagatgcatgaa 234
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 318 gggcagaagccagagcatcaaccccaaggttcagaggaacaaaattgtcagatgcatgaa 259
Query: 235 gcaacaatggaatgcaaatgactatccagagtaatattgtgaagcagagtttgttgtg 292
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 258 gcaacaatggaatgcaaatgactgtccagagtaatattgtgaagcagagtttgttgtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 701
Length adjustment: 9
Effective length of query: 286
Effective length of database: 692
Effective search space: 197912
Effective search space used: 197912
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
