Query= MSMg01no090_j10.b1 MSMg01no090_j10.b1 CHROMAT_FILE:
MSMg01no090_j10.b1 PHD_FILE: MSMg01no090_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:47 2005
(568 letters)
>mm_chr9_52404330_52405297
Length = 968
Score = 1031 bits (533), Expect = 0.0
Identities = 557/565 (98%)
Strand = Plus / Plus
Query: 4 ggaattctctcaactcttcatgacacacactcagtaatgtccattagatccccctctctc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 204 ggaattctctcaactcttcatgacacacactcagtaatgtccattagatccccttctctc 263
Query: 64 tgcctcatcttcagtgctgtattctctcattcccaccaagcttgctgagcaccacaacgg 123
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 264 tgcctcatcttcagtgttgtattctctcgttcccaccaagcttgctgagcaccacaacgg 323
Query: 124 cttcccaattgctctctctgaatccactgtattttaaacttcaaagtcagagaacttgtc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cttcccaattgctctctctgaatccactgtattttaaacttcaaagtcagagaacttgtc 383
Query: 184 tattcccatttctttgtcagatctgtcactcagcaccacacctagttagtaagtgaatga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tattcccatttctttgtcagatctgtcactcagcaccacacctagttagtaagtgaatga 443
Query: 244 ctgaattcatccttgcttttctctggatccctcaccaagatgatagtctcaaataataaa 303
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgaattcacccttgcttttctctggatccctcaccaagatgatagtctcaaataataaa 503
Query: 304 tgtatcacatcatttccttctttaaaatgtttcaatgactcattttgcattttgattaaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgtatcacatcatttccttctttaaaatgtttcaatgactcattttgcattttgattaaa 563
Query: 364 actcaatgttagttgctatagtttatagggaatgtgggtgctctgcccatggcttagctc 423
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 actcaacgttagttgctatagtttatagggaatgtgggtgctctgcccatggcttagctc 623
Query: 424 ttcttctgtgtcattcacagtatctctcctgggcgttgtttgatctggttagtctgaata 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttcttctgtgtcattcacagtatctctcctgggcgttgtttgatctggttagtctgaata 683
Query: 484 tctagagcctaaaacactctgctctcttgactctgggaccatgacatggctcgaagctct 543
||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 684 tctagagcctagaacactctgctcttttgactctgggaccatgacatggctcgtagctct 743
Query: 544 tatgacagttctttatcaatattgt 568
|||||||||||||||||||||||||
Sbjct: 744 tatgacagttctttatcaatattgt 768
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space: 534564
Effective search space used: 534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no090_j10.g1 MSMg01no090_j10.g1 CHROMAT_FILE:
MSMg01no090_j10.g1 PHD_FILE: MSMg01no090_j10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:47 2005
(289 letters)
>mm_chr9_52566047_52566736
Length = 690
Score = 516 bits (267), Expect = e-151
Identities = 282/287 (98%), Gaps = 1/287 (0%)
Strand = Plus / Minus
Query: 1 aaggccagctagccagtcagaggtatatgttgaagctatgtttttaaaac-aacagacat 59
||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 400 aaggctagctagccagtcagaggcatatgttgaagctatgtttttaaaacaaacagacat 341
Query: 60 gaatttctatattctgggacattcttgggaagtttctcaatatataagcactcatttatc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gaatttctatattctgggacattcttgggaagtttctcaatatataagcactcatttatc 281
Query: 120 tcttttttttgagcttttaaaaatcattttatgttagatggtagagaatggagttttatg 179
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 280 tcttttttttgagcttttaaaaatcattttatgttagatgggagagaatggagttttatg 221
Query: 180 aagaagcccttacctgagaattcgttctctctctccttccttcattccttaattctttcc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 aagaagcccttacctgagaattcgttctctctctccttccttcattccttaattctttcc 161
Query: 240 cttctctcctggtgatttttatttacatattttattaataatattgg 286
|||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 160 cttctctcctggtgatttttatttacatattttagtaataatattgg 114
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 690
Length adjustment: 9
Effective length of query: 280
Effective length of database: 681
Effective search space: 190680
Effective search space used: 190680
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
