Query= MSMg01no090_j12.b1 MSMg01no090_j12.b1 CHROMAT_FILE:
MSMg01no090_j12.b1 PHD_FILE: MSMg01no090_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:48 2005
(318 letters)
>mm_chr9_72476911_72477628
Length = 718
Score = 553 bits (286), Expect = e-162
Identities = 307/314 (97%), Gaps = 1/314 (0%)
Strand = Plus / Plus
Query: 4 ggaattcactttgtagaccaggctggcttcaaactcagaaatctgcctgcctctgcctcc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcactttgtagaccaggctggcttcaaactcagaaatctgcctgcctctgcctcc 264
Query: 64 caagtactggaattacaaggcatgcgccaccactcccggctgtaaatatgttttcttatg 123
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 265 caagtactggaatta-aaggcatttgccaccactcccggctgtaaatatgttttcttatg 323
Query: 124 gtcttaaacaacttatatgaaagggtcatttgaccccaaggggtcatgcatagtttgaga 183
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 324 gtcttaaacaacttatatgaaagggtcatttgaccccaaggggtcgtgcatagtttgaga 383
Query: 184 accactgccctaaaataactatgagctgtaggaataatatataaactaactcacagttgt 243
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 384 accactgccctaaaataactaggagctgtaggaataatatataaactaattcacagttgt 443
Query: 244 agcaacattacagtttttatacacggaagattcagatgaatattaaaactaaaagaatag 303
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 444 agcaacattacagtttttatacatggaagattcagatgaatattaaaactaaaagaatag 503
Query: 304 agaaccttcatgta 317
||||||||||||||
Sbjct: 504 agaaccttcatgta 517
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no090_j12.g1 MSMg01no090_j12.g1 CHROMAT_FILE:
MSMg01no090_j12.g1 PHD_FILE: MSMg01no090_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:48 2005
(290 letters)
>mm_chr9_72626596_72627285
Length = 690
Score = 466 bits (241), Expect = e-136
Identities = 270/289 (93%), Gaps = 15/289 (5%)
Strand = Plus / Minus
Query: 1 ctaaggcaattacgtagagcccctccctgccctcctgttttctccgtggattcctgactc 60
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ctaaagcaattccgtagagcccctccctgccctcctgttttctccgtggattcctgactc 334
Query: 61 gctcagctcagtcagagtgctccggtctgtgtccttagggctccggaggtgcaggtgatg 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gctcagctcagccagagtgctccggtctgtgtccttagggctccggaggtgcaggtgatg 274
Query: 121 ggataaactgattggtacacagcagggatactgtggctgctgaatggactattatgataa 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ggataaactgattggcacacagcagggatactgtggctgctgaatggactattatgataa 214
Query: 181 gtaagtattgcaaggaatagatggctctctccagagcattctgcaatattctagaatgcc 240
||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 213 gtaagtattgcaa---------------ctccagagcattctgcaatattctagaatgcc 169
Query: 241 ttcagcctcttcagtaaacattatgggagatactaagaggtcttttttg 289
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 ttcagcctcttcagtaaacattatgggagatactaagaggtcttttttg 120
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
