BAC Information

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BAC

Clone NameMSMg01-090J21
Chromosome9 (Build37)
Map Location 71,565,120 - 71,565,299
singlet/doubletsinglet
Overlap geneCgnl1
Upstream geneAdam10, Lipc, LOC100041622, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2, Grinl1a, AA407270, LOC547043, LOC100040537
Downstream geneTcf12, EG666001, LOC665959, EG665964, LOC665970, Suhw4, LOC100041760, Mns1, LOC666007, Tex9, 4930509E16Rik, Rfxdc2, Nedd4, EG639396
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090J21.T7 (MSMg01no090_j21.b1)MSMg01-090J21.TJ (MSMg01no090_j21.g1)
ACCAG308800AG308801
length764728
length of high quality
(start - end)
180 (48 - 227)281 (75 - 355)
definitionCHROMAT_FILE: MSMg01no090_j21.b1 PHD_FILE: MSMg01no090_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:49 2005CHROMAT_FILE: MSMg01no090_j21.g1 PHD_FILE: MSMg01no090_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATGCGCGG
AATTCTCCCTCTTTTCGAACAGTCTATTGGATCAGAAGAACAATTGATCC
TAGAAGTGTCTGAACTACAGCAGCAACTGCAACTGTAGATGAAGGTAGCT
GGCTTTTATATTTTTTCCCATTTCTGCCTTGGTAGCTAAAGGTTTGTTTT
TTGTTTTGTTGTTGTTGTTTTGTTTGTTTTTGTTTTTTTTTTTNTTTNTT
TTATTTTTCACTCTAATATTTTCTTTATTTTTTCTTCCCCCCTCGTTTTT
TTTCTTCATATCACTTTCTAATTTTTTTTCTTATACTTATCATAATTTAA
TATTTCACACATAATATTTATTTTTAACCTCCCCACTCCGTCGAAAATTA
CCCTATACAAATCATACCATATACAACACACAAATAAAAATACAACTAAT
ATTCATTTAGATATCCCAATCACTATACCTACCACACCACTCCCCACAAC
TTTTTCATATATATCTTCTTTTTCTTTTCACCTTCTCCACTTTTCTCCCC
AACCCTTCTCCTCCCAACATTCTCCATCTCCCCCACTTCACTCCTCTCCT
CCTTTATTTTTTTTTATTTTTATACTTTATTATTTTTTTTCATATTACTC
TTTTATTCTTTCTTCCTATCTATTTCTAAACTAATTTAATTTTTATATTT
TTTCTTTAATCCTATACTACCCTACTTATTAATTATATATCTAAAAGTTA
TTACACTATCCATC
CCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGGTGGGCTGTTACTCAGAG
AAACAATGTCAAAAAATAAAAATAAAAAAAAAGGAGTGGGGCTATTTAAC
TTGTATAAATCTTAAGTCTTTTTGGTGTTCAGGCTGTGTCCATTTTAACC
AGAAAGTGCTATCAGGACAGTGGTTAACAGCATCGTCTACTCTTCCCAAG
AACCCAGGTTAGATTCCTAGCACCCACGGGGCACCTCACAACCATTTGTA
ACTCCAGTTCCAGGGATCTGACACCCTCTTCTGGCCTCCATGGACCATGC
ATGTGGTACACAGACAGACATACAGGCAAAACGCACATGCACATAAAATA
TAAATAAATCAAATATTTCATAAAAAATAAAATCAGTTCCTAAAGCTTTG
GCTAGGCCTTCCTGTTGCTACCTGGATTTCCAGAACAGGGTATGTCAGGT
CTAGCTTGTCTTCCCCTCTCCTGGAATGTCCTTCCAAGTGTCGTTGGCGC
GGCATTTCCTCTCCCTTCACAACAGGTCAGAGAAGTTCCATTCTCTCACG
ACTCTCTGGCTATAAGTTCATCTTCCTTCCTCCCCTACTTCCTCTGCCTG
CTACTTGTCATTTGTATCCATTCCCGATAATTGTTGACCTTCGCTGTATA
AGGTAAAATAATGTATCTGCCTATATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_j21.b1 MSMg01no090_j21.b1 CHROMAT_FILE:
MSMg01no090_j21.b1 PHD_FILE: MSMg01no090_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:49 2005
         (180 letters)



>mm_chr9_71564900_71565480
          Length = 581

 Score =  298 bits (154), Expect = 1e-85
 Identities = 173/184 (94%), Gaps = 10/184 (5%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattctccctcttttcg-----aacagtctattggatcagaagaac-aattgatcctag 56
           |||||||||||||    |     |||||||||||||||||||||||| ||||||||||||
Sbjct: 400 gaattctccctct----gaaggcaacagtctattggatcagaagaacaaattgatcctag 345

                                                                       
Query: 57  aagtgtctgaactacagcagcaactgcaactgtagatgaaggtagctggcttttatattt 116
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 344 aagtgtctgaactacagcagcaactgcaactggagatgaaggtagctggcttttatattt 285

                                                                       
Query: 117 tttcccatttctgccttggtagctaaaggtttgttttttgttttgttgttgttgttttgt 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tttcccatttctgccttggtagctaaaggtttgttttttgttttgttgttgttgttttgt 225

               
Query: 177 ttgt 180
           ||||
Sbjct: 224 ttgt 221


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 581
Length adjustment: 8
Effective length of query: 172
Effective length of database: 573
Effective search space:    98556
Effective search space used:    98556
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)