Query= MSMg01no090_m15.b1 MSMg01no090_m15.b1 CHROMAT_FILE:
MSMg01no090_m15.b1 PHD_FILE: MSMg01no090_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:04 2005
(564 letters)
>mm_chr9_52404018_52404981
Length = 964
Score = 1042 bits (539), Expect = 0.0
Identities = 554/559 (99%)
Strand = Plus / Minus
Query: 5 gaattcagtcattcacttactaactaggtgtggtgctgagtgacagatctgacaaagaaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 gaattcagtcattcacttactaactaggtgtggtgctgagtgacagatctgacaaagaaa 704
Query: 65 tgggaatagacaagttctctgactttgaagtttaaaatacagtggattcagagagagcaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tgggaatagacaagttctctgactttgaagtttaaaatacagtggattcagagagagcaa 644
Query: 125 ttgggaagccgttgtggtgctcagcaagcttggtgggaatgagagaatacaacactgaag 184
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 643 ttgggaagccgttgtggtgctcagcaagcttggtgggaacgagagaatacaacactgaag 584
Query: 185 atgaggcagagagagggggatctaatggacattactgagtgtgtgtcatgaagagttgag 244
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 atgaggcagagagaaggggatctaatggacattactgagtgtgtgtcatgaagagttgag 524
Query: 245 agaattccatgaaaatatcctttctaacatggactgcaggtgcatggtgacaactttgct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 agaattccatgaaaatatcctttctaacatggactgcaggtgcatggtgacaactttgct 464
Query: 305 gatgtgggggtcattgtacaagagcagatgaggcaggcaagaagctaaacaagttccatt 364
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 463 gatgtgggggtcattgtaaaagagcagatgaggcaggcaagaagctaaacgagttccatt 404
Query: 365 ttctcagtgtggaaactaatcactggctgtttgttttaatcagctatatttgacaattgt 424
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 403 ttctcagtgtggaaactaatcactggctgtttgttttaatcagctacatttgacaattgt 344
Query: 425 tttatgcaattgtttgaagaactgcacacatatgtgatgataaagatgaagcatttcaag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tttatgcaattgtttgaagaactgcacacatatgtgatgataaagatgaagcatttcaag 284
Query: 485 tgttttctggtctgcaccactgcagttctaatgtggtttagtaatcccattctttatctt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tgttttctggtctgcaccactgcagttctaatgtggtttagtaatcccattctttatctt 224
Query: 545 ttctcataggtttctgatg 563
|||||||||||||||||||
Sbjct: 223 ttctcataggtttctgatg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no090_m15.g1 MSMg01no090_m15.g1 CHROMAT_FILE:
MSMg01no090_m15.g1 PHD_FILE: MSMg01no090_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:04 2005
(281 letters)
>mm_chr9_52358887_52359568
Length = 682
Score = 520 bits (269), Expect = e-152
Identities = 278/281 (98%), Gaps = 1/281 (0%)
Strand = Plus / Plus
Query: 1 atgaatatttgaaaaataattcacaaattctcatggaaaccagtaagcctcagactaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgaatatttgaaaaataattcacaaattctcatggaaaccagtaagcctcagactaaca 260
Query: 61 gcctctgatttgagatccaacaaagctagagactgggtactacttattgtttgttttctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 gcctctgatttgagatccaacaaagctagagactgggtactacttattgtttgctttctt 320
Query: 121 tgctaaaggcattagactggaaagctttgactccagggggtacagaaggaaccctttaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctaaaggcattagactggaaagctttgactccagggggtacagaaggaaccctttaag 380
Query: 181 aattcacatgctactccaggccattggacttatggataaatactttcctacaaggggaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattcacatgctactccaggccattggacttatggataaatactttcctacaaggggaaa 440
Query: 241 aatgacaccttccagaagtatcatttttt-ctggaagagga 280
||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 441 aatgataccttccagaagtatcatttttttctggaagagga 481
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 682
Length adjustment: 9
Effective length of query: 272
Effective length of database: 673
Effective search space: 183056
Effective search space used: 183056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
