Query= MSMg01no091_d19.b1 MSMg01no091_d19.b1 CHROMAT_FILE:
MSMg01no091_d19.b1 PHD_FILE: MSMg01no091_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:40 2005
(566 letters)
>mm_chr9_93958717_93959682
Length = 966
Score = 980 bits (507), Expect = 0.0
Identities = 551/567 (97%), Gaps = 9/567 (1%)
Strand = Plus / Minus
Query: 4 ggaattctttactttcgggatatttgtgtgagtctaaaaccactaggcaataacacatcc 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 ggaattctttacttttgggatatttgtgtgagtctaaaaccactaggcaataacacatcc 863
Query: 64 tagaaaaattaaggtgtagaatagctaaatactatttcatgtggatggattctatgtttt 123
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 862 tagaaaaattaaggtgtagaatagctaaatactatttcacgtggatggattctatgtttt 803
Query: 124 aaaatctatatcttaaaattcataaacattttctgaaactaagccattccattatatttt 183
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 802 aaaatctatatcttaaaatttataaacattttctgaaactaagccattccattatatttt 743
Query: 184 aaatcagaatttccatctcatatattttacatgtaggtctgagaaatatgctcacacaca 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 aaatcagaatttccatctcatatattttacatgtaggtctgagaaatatgctcacacac- 684
Query: 244 aaaaaaatcaaatttt-tt-tataa--ttattacttattagatagttgaataaacatgat 299
||||||||| |||||| || | ||| |||||||||||||||||||||||||||||||||
Sbjct: 683 aaaaaaatc-aattttgttgtgtaaagttattacttattagatagttgaataaacatgat 625
Query: 300 agggaatacaacatggtttacaaaaggtatttgttatctggataaaagcaagtccagaag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agggaatacaacatggtttacaaaaggtatttgttatctggataaaagcaagtccagaag 565
Query: 360 tatcaaaacagagctctttttatttcaggcctaactatgtacaggacccatcgcttcgag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tatcaaaacagagctctttttatttcaggcctaactatgtacaggacccatcgcttcgag 505
Query: 420 tgtgctctcattagacttgaaatgaaggttggttttgtttttttcttgtttctttctttc 479
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 504 tgtgctatcattagacttgaaatgaaggttggttttg-ttttttcttgtttctttctttc 446
Query: 480 tttttttttgtctgtctgcttgtttgtttttcactcacacccagaacagaatagcaatcc 539
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 445 --tttttttgtctgtctgcttgtttgtttttcactcagacccagaacagaatagcaatcc 388
Query: 540 cttcctttatagtaggtgagttctgag 566
||||||| |||||||||||||||||||
Sbjct: 387 cttccttcatagtaggtgagttctgag 361
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no091_d19.g1 MSMg01no091_d19.g1 CHROMAT_FILE:
MSMg01no091_d19.g1 PHD_FILE: MSMg01no091_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:40 2005
(129 letters)
>mm_chr9_93828347_93828874
Length = 528
Score = 219 bits (113), Expect = 7e-62
Identities = 125/129 (96%), Gaps = 1/129 (0%)
Strand = Plus / Plus
Query: 1 atctcctccattcagttcttctagcaaattactaatcatttataaattgatgtctgatat 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 201 atctcctccattcagttcttctagcaaattactaatcatttataaattaatgtatgatat 260
Query: 61 tatttacatagatgcatacccatatacatatatattgaaaatcttcctgcatgccaatgt 120
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 tatttacatagatgcatacc-atatacatatatattgaaaatcttcctgcatgcaaatgt 319
Query: 121 aatgtgctg 129
|||||||||
Sbjct: 320 aatgtgctg 328
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 129
Length of database: 528
Length adjustment: 8
Effective length of query: 121
Effective length of database: 520
Effective search space: 62920
Effective search space used: 62920
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
