BAC Information

Click to search

BAC

Clone NameMSMg01-091H17
Chromosome9 (Build37)
Map Location 3,902,935 - 3,903,475
singlet/doubletsinglet
Overlap genenone
Upstream gene4930433N12Rik, LOC664797, Olfr369-ps1, Alkbh8, Cwf19l2, LOC384911, Gucy1a2
Downstream geneLOC100039236, LOC384912, LOC100039253, Aasdhppt, Kbtbd3, LOC664860, 8430410K20Rik, Gria4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091H17.T7 (MSMg01no091_h17.b1)MSMg01-091H17.TJ (MSMg01no091_h17.g1)
ACCAG309420AG309421
length706710
length of high quality
(start - end)
544 (47 - 590)387 (76 - 462)
definitionCHROMAT_FILE: MSMg01no091_h17.b1 PHD_FILE: MSMg01no091_h17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:01 2005CHROMAT_FILE: MSMg01no091_h17.g1 PHD_FILE: MSMg01no091_h17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCATTTTTGCCTTCTTTTTTAGACACTTAAGATATTTGAATTACT
TTCTGTTATAAATCAAATACTTTGCTAGGCATTATCTAATTTTCCCTGAA
AAATAAATGGCTTGGATTGAGATACATAAATCCTTTGCTATAACAATATG
AAATATCAAAATTAGGTCTTTTTATTTCAAACCATGGAAATTCATTAATT
CTAGAAAATAAGTCAAAGCTGTGCTTAAAAAGTTACACGTAAATGTGTTA
AAATTTTAAAAGGGTAGAGCTAAGAAACATGGAGAATGCTACTTATTGCT
TCCTCAGCAGGGTAGATATAAATTCTATGTTGAATTTTGTCAGACACTTC
AAGATCTAGAAACACTATAACAGAACTATCTGACTCATGTAACAGTACCC
AAGAAGTTTGGTAGTGTATCCCTTACATCTAAAGGTCCAGTAAAATCAAC
TTGCATTTCATGTACCTATGATTCTAAAAGCAGATTTGAGAAAAGCCTTT
TCTATCTCAATCTTTAGCAGTGTGATTCTCAAATCTAATGAAAAAGTATA
GATTAAGCTAGAACAGGATTTTCTGAATGAAGACTTGCAGGCCTAATGGC
CAGGAGCTTTAACATGTTGATTCTGATACTTACCAGGAGAGAGCAAAGAT
ATTTGT
TCACGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGAAGTTGTTAATTTCTTCCCTG
ACCAAGTTATCATTGAGGAGAGAGTTCAATTTTCATGGATATGTTGGTTT
TTTTGGTTTTGTTCTTATTGAACTGTAGCCTTAGTGTGTATGGATCTGAT
AGGATGCATTGGATTATTTCTGTACTTTTCTTTCAGTTGAGACTTCTTTT
GTGTCTGGTTATATGGTCAGTTTTGGAGATGGTTCCATGAGGTGCTGAGA
AGAAGGTATAATCCTTTGTTTATGGTTAAATATTCTGTATATAAATGTTA
AATCTATTTGGTTCATAACCTCCATTAGTTTCACTGTGTCTCTGTTTAGT
TTTTATTTCAAAGACCTGTCCATTGATGGGATGTTGAAGTTTCCCACTAT
TATTTTGCAGAGTTAAATGTGTGTTTTCAGTGTTACTAACGTTTTTTATG
AATGTTGGCACCCTTGCCTTTGGCGCATATATGTTCATAATCCAGACTTT
CTCTTAATGCCCTTTTTCTTTGACGAATATTACGCGTCCTTCCTCATCTC
ACTTGATCACTTCAGGTTGATACTTTATCTTATTGCCCTTTACCATGGTT
TCCCCTAACTTGTTCCTGTATTTTTGCCTTGCCAGACATTTCCCTGGCTT
CCTCCACCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_h17.b1 MSMg01no091_h17.b1 CHROMAT_FILE:
MSMg01no091_h17.b1 PHD_FILE: MSMg01no091_h17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:01 2005
         (544 letters)



>mm_chr9_3902731_3903675
          Length = 945

 Score = 1015 bits (525), Expect = 0.0
 Identities = 537/541 (99%), Gaps = 1/541 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatttttgccttcttttttag-acacttaagatatttgaattactttctgttat 63
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 745 gaattccatttttgccttcttttttagtacacttaagatatttgaattactttctgttat 686

                                                                       
Query: 64  aaatcaaatactttgctaggcattatctaattttccctgaaaaataaatggcttggattg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaatcaaatactttgctaggcattatctaattttccctgaaaaataaatggcttggattg 626

                                                                       
Query: 124 agatacataaatcctttgctataacaatatgaaatatcaaaattaggtctttttatttca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agatacataaatcctttgctataacaatatgaaatatcaaaattaggtctttttatttca 566

                                                                       
Query: 184 aaccatggaaattcattaattctagaaaataagtcaaagctgtgcttaaaaagttacacg 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 565 aaccatggaaattcattaattctagaaaataagtcaaagctgtgcttaaaaagttacatg 506

                                                                       
Query: 244 taaatgtgttaaaattttaaaagggtagagctaagaaacatggagaatgctacttattgc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taaatgtgttaaaattttaaaagggtagagctaagaaacatggagaatgctacttattgc 446

                                                                       
Query: 304 ttcctcagcagggtagatataaattctatgttgaattttgtcagacacttcaagatctag 363
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttctcagcagggtagatataaattctatgttgaattttgtcagacacttcaagatctag 386

                                                                       
Query: 364 aaacactataacagaactatctgactcatgtaacagtacccaagaagtttggtagtgtat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaacactataacagaactatctgactcatgtaacagtacccaagaagtttggtagtgtat 326

                                                                       
Query: 424 cccttacatctaaaggtccagtaaaatcaacttgcatttcatgtacctatgattctaaaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cccttacatctaaaggtccagtaaaatcaacttgcatttcatgtacctatgattctaaaa 266

                                                                       
Query: 484 gcagatttgagaaaagccttttctatctcaatctttagcagtgtgattctcaaatctaat 543
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcagatttgagaaaaggcttttctatctcaatctttagcagtgtgattctcaaatctaat 206

            
Query: 544 g 544
           |
Sbjct: 205 g 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 945
Length adjustment: 10
Effective length of query: 534
Effective length of database: 935
Effective search space:   499290
Effective search space used:   499290
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)