BAC Information

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BAC

Clone NameMSMg01-091I05
Chromosome9 (Build37)
Map Location 30,410,713 - 30,410,962
singlet/doubletsinglet
Overlap genenone
Upstream geneHnt, Snx19, LOC666478
Downstream geneAdamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558, EG666576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091I05.T7 (MSMg01no091_i05.b1)MSMg01-091I05.TJ (MSMg01no091_i05.g1)
ACCAG309444AG309445
length692697
length of high quality
(start - end)
74 (191 - 264)250 (126 - 375)
definitionCHROMAT_FILE: MSMg01no091_i05.b1 PHD_FILE: MSMg01no091_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:03 2005CHROMAT_FILE: MSMg01no091_i05.g1 PHD_FILE: MSMg01no091_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTCTCCTTCCATGACACACCTCCTATTTCCTGCCTAAGCCATACGTC
ATAGGTTTCTTACTTGACCGCCGATATAGACATACAAAACACAAGATATT
CTCTCTACAGAGAAACTTGTCTTCCTGTTACAGGAATGGTTGACTTCACT
GGTGCTAGGGACTATAGATCAGTACTCTCATCAACCCAGTCTTTGATTTC
TTACATACATAAAGGTTGGGTGGAACCATAGCAGCCCTTGTCCCAGCTGA
CAACTTTATTAGAGTTGTACCTAGCCCAATCTTGGAACGATGATGGTAGT
CTCCGAAGGATGCCATATCATGAATGCCTGGTGACTGTGATCAGCTTGGC
TTTTACTAGCTCCCCCCAAGCTCATGTGCGTCTCACCCTAGGGAAGGAAG
AACATAATCATAACAAACGATGAATGATAGAGATAACGTCTTTAAGAGGA
ATGTGCTTGGCTTGGCTCTTCTAGCCTGCTCAAAGGAAAGGTTCGTTCCT
GCATTTTTCTTCCCTGTACCTCATAAAGATTTGGGGTGCCCCATATGCTC
TCGAAAAAGCCTACCTTTCAATGGTCATTAAATAAAAGAAACCTTACCTT
TATTGCCCTTTTTCCAAGACAAACGGGCTTCGGAACCCTGGA
CGATGCTAGCGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTTACTCTAAAGTCATCCATACAGGGA
AGATCTTATAGGAGGCTTGCACCACATGAGAAGAATGCCTGAAAGGTCTT
CCCTCAGAGCACTCAACTGTTTGAGCCTGAGTCCACCCACAAGCAGGTGA
TAGAGGGGCCTTGAGATGGTTCCTCTCTTCAGGTTACTCAGTCTTGTGAA
TTTTCAGCACAAGTTGGGCAGAGGCAGCTGCTATGCTGAGTTCTGCCCCA
TTCCAGTTCCTGAAGAAAAAAAATATTGCTGTTCTCAAGCCATTAGTTTG
GGGAGGTTCTTTATGTGTCCCTCTTCCTTAGCTGAGAAAATGAGGCATAA
ATAATGGAAGTTAGCCTTTCACGTGAAGGGAGAAATCAGGGGGTGTTTAG
AATCTCAGTACATCAAACAAATGGATGTAGAGACGTGCCCACTGAATTAT
TTTCACAGACATTTGCCGCATTTGCGTGAATAGAAATTTCTAAGCTTCCC
AATTAGGGTCTTGGAATATCATCCCAGCAAATCATTCCTTTTTATAAGGT
GTATTTTCCATAGCTTAATTCTTACGCTCGATACTTTAATCCGAATTTCG
CCTTTGCGGCCAACCTTTCCTACGTTTAGCACTTCTTCTTCTTAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_i05.g1 MSMg01no091_i05.g1 CHROMAT_FILE:
MSMg01no091_i05.g1 PHD_FILE: MSMg01no091_i05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:03 2005
         (250 letters)



>mm_chr9_30410513_30411162
          Length = 650

 Score =  468 bits (242), Expect = e-136
 Identities = 248/250 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgagaagaatgcctgaaaggtcttccctcagagcactcaactgtttgagcctgagtcca 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 atgagaagaatgcctgagaggtcttccctcagagcactcaactgtttgagcctgagtcca 391

                                                                       
Query: 61  cccacaagcaggtgatagaggggccttgagatggttcctctcttcaggttactcagtctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 cccacaagcaggtgatagaggggccttgagatggttcctctcttcaggttactcagtctt 331

                                                                       
Query: 121 gtgaattttcagcacaagttgggcagaggcagctgctatgctgagttctgccccattcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gtgaattttcagcacaagttgggcagaggcagctgctatgctgagttctgccccattcca 271

                                                                       
Query: 181 gttcctgaagaaaaaaaatattgctgttctcaagccattagtttggggaggttctttatg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 270 gttcctgaagaaaaaaaatattgctgttctcaagccattagtttggggaggttctttaag 211

                     
Query: 241 tgtccctctt 250
           ||||||||||
Sbjct: 210 tgtccctctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)