BAC Information

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BAC

Clone NameMSMg01-091L15
Chromosome9 (Build37)
Map Location 9,666,276 - 9,666,687
singlet/doubletsinglet
Overlap geneCntn5
Upstream geneTrpc6, Pgr, 9030420J04Rik
Downstream geneLOC665154, LOC100039970
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091L15.T7 (MSMg01no091_l15.b1)MSMg01-091L15.TJ (MSMg01no091_l15.g1)
ACCAG309600AG309601
length703706
length of high quality
(start - end)
381 (47 - 427)441 (77 - 517)
definitionCHROMAT_FILE: MSMg01no091_l15.b1 PHD_FILE: MSMg01no091_l15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:20 2005CHROMAT_FILE: MSMg01no091_l15.g1 PHD_FILE: MSMg01no091_l15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTTACCTCCGAACCCCATTTTTAAATGAGTTTATTTGAAT
TTCTGGAGTTCAGCTTCTTGAGCTCTTTGTAGATATTGGTTATTAGTCCC
CTATCATATTTAGAATTGGAAAAATTCTTTTCCAATCTGTTGGTGGCCTT
TTGGTCTTATTGACACTATCTTTTGCCCTTTAGAAGCTTTGCAATTTTAT
GAGGTCCCAATTGTCGATTCTTGATCTTACAGCACAGGCCATTGCCTTTC
TATTTAAGAATTTTCCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCAAT
TTCTACTCTATAAATTTCAGTGTCTCTGGTTTTATGTGGAGATCTTTGAT
CCACTTAGACTTGAACTTTGTACAAGGAGCTAAGAATGGATCAATTCGCA
TTCTTCTACGTGATAACCACCAGTTGTGCCAGCCGAAAATACTGTCTTAT
TTCCACTGGATGGTTTTAGATCCCTTGTCAAAGACCAAGTGTGTGGGTTT
ATTTCTGGGTCTTCAATTCTATTCTATTGATCTACCTGTCTGTCATTGTA
CCAGTACCATGCAGTTTTTATCACGATTGCTCTGCCATTCAGCTTGAGCT
CAGGCTTGGTGATTCCCCCATAGTTTCCTTCATCGCCGAAATATTTTTTG
CTA
TCCTCGATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGCCATTCTGCAATCAGCATAA
ATGACACCTGCAAACTAGAAAGCAGGTGATGTTTTCATCAGTACACACTG
TTTATAAAGTTCTTTGCCTAACCTGGGCTAAGTAGTAACTAGCCACTTGG
CTGTTGAAAGTTGTTTAGTACACCTGCGTCTCTATTAGCATGATTGTTCT
ATGAAATGAAAGGGAATGTACAGGGAAGTATTTTAAAATTTAAAACTAAT
ATTTATTGAGTTCTAAACCTATGACATATTGCAGTCTTCATTACTGTTAC
CATGTAATGGGTGAGTGTATAATGATTTATTTGTCTGCAATTTCAAAAGC
AAAGGCCATGCCTCATGATGCCACAGAAGGCTCTGTCTATGGCTTATCTC
ATAAATACATTCATCACATAGAAACAAGCCAAAGGCATTGTTCATCATTC
TATTTTGATGACTCACCCAGACAGCGATAGCAAATATAGCCGAGGAAAGA
GTAACCCTGGACTTTGAATGAAAGCTCTTGACACAGTGCTTGATTAATCC
AAATTCCAGACTGGAAGCTTACCATTCCAAAACCATGGCACGTGACTGAC
AAGAGCCTGTGCACTCCCTAACAACCTTAGGTCCCTCCTTTGACTAGAGG
CAATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_l15.g1 MSMg01no091_l15.g1 CHROMAT_FILE:
MSMg01no091_l15.g1 PHD_FILE: MSMg01no091_l15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:20 2005
         (441 letters)



>mm_chr9_9665845_9666687
          Length = 843

 Score =  698 bits (361), Expect = 0.0
 Identities = 401/415 (96%), Gaps = 6/415 (1%)
 Strand = Plus / Minus

                                                                       
Query: 28  acacctgcaaactagaaagcaggtgatgttttcatcagtacacactgtttataaagttct 87
           |||||||||||||||||||||||||||||||||||  |||||| | ||||||||||||||
Sbjct: 843 acacctgcaaactagaaagcaggtgatgttttcatttgtacac-c-gtttataaagttct 786

                                                                       
Query: 88  ttgcctaacctgggctaagtagtaactagccacttggctgttgaaagttgtttagtacac 147
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 ttgcctaacctgggctaagtagtaactagccacttggctgttgaaagttgtttagtacac 726

                                                                       
Query: 148 ctgcgtctctattagcatgattgttctatgaaatgaaagggaatgtacagggaagtattt 207
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ctgtgtctctattagcatgattgttctatgaaatgaaagggaatgtacagggaagtattt 666

                                                                       
Query: 208 taaaatttaaaactaatatttattgagttctaaacctatgacatattgcagtcttcatta 267
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 665 taaaatttaaaactaatatttattgagttctaaacatatgacatattgcagtcttcatta 606

                                                                       
Query: 268 ctgttaccatgtaatgggtgag--tgtataatgatttatttgtctgcaatttcaaaagca 325
           ||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||
Sbjct: 605 ctgttaccatgtaatgggtgagagtgtataatgatttatttgtttgcaatttcaaaagca 546

                                                                       
Query: 326 aag-gccatgcctcatgatgccacagaaggctctgtctatggcttatctcataaatacat 384
           ||| || ||||||| ||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 545 aagagc-atgcctcgtgatgccacagaaggctctatctatggcttatctcatgaatacat 487

                                                                  
Query: 385 tcatcacatagaaacaagccaaaggcattgttcatcattctattttgatgactca 439
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tcatcacatagaaacaagccaaaggcattgttcatcattctattttgatgactca 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 843
Length adjustment: 9
Effective length of query: 432
Effective length of database: 834
Effective search space:   360288
Effective search space used:   360288
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)