BAC Information

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BAC

Clone NameMSMg01-091L17
Chromosome9 (Build37)
Map Location 4,611,398 - 4,611,587
singlet/doubletsinglet
Overlap geneGria4
Upstream geneGucy1a2, LOC100039236, LOC384912, LOC100039253, Aasdhppt, Kbtbd3, LOC664860, 8430410K20Rik
Downstream geneEG664889, Casp1, Casp4, Casp12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091L17.T7 (MSMg01no091_l17.b1)MSMg01-091L17.TJ (MSMg01no091_l17.g1)
ACCAG309604AG309605
length716721
length of high quality
(start - end)
190 (121 - 310)370 (75 - 444)
definitionCHROMAT_FILE: MSMg01no091_l17.b1 PHD_FILE: MSMg01no091_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:20 2005CHROMAT_FILE: MSMg01no091_l17.g1 PHD_FILE: MSMg01no091_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXNATACCGTATCGGAGNCGNGGAANN
CNATGGTGACTNTCATCATTCTGGNNGNGNCANATTTGAAAAATAGGGAA
AGCATGTAGAATTTTACACAAAGAGAAACCATAACCACAGTGCTATGCAC
TGTGTGTTTGTAAGCCTGTTATTTCAAATTATTGAAGGCTAATAGAATAT
AATTGGTTAATAAAGTACAGCAGGTTAATAAAACAAAATAAAATTATATT
TGATTATAGCATAACAATTACAGAAAGACAAGGTTAATTTATTGATGAAG
AAAACATGCCTTACCTCGTTTACGCGCATATGTGCGCATGCGAGCATGTG
TAGTCAATGTCCCGCCCAGAGAATAGGAAACATTTTCCCCTCTTGATCTT
TAGCTCACTTTTGATATAGCCTCTCTTTCTGAACCTGCATTTGCTGTGTT
CCTCTAACGTGACTGTCCAGAGAGTTCCCTGAATGCGTTGTCTCTTTCCC
TTATCCCTGGCTACTTATAGTTTGAACTCATAACCCTAAACTCTAACAGT
TTAGAACTACCGTCCCATGCCCTCGCCTCTCCTCCCACTTTTCCTTGCCA
TCATCTATTAACCCTGCCCCCCCTTAACTATAGATACCCATTTCTTTTTT
TTTTGTTTGCCATGACAAATATCCCACCGCATATCTTTGACCCCCCCGCC
CAAACCTTATAATCCT
TCATTGAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAGAT
CAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAGATG
TGGCACATCTACACAATGGAGTACTACTCAGCTATTATAAAGAATGAATT
TATGAAATTCCTGGCCAAACGGATGGACCTGCAGGGTATCATCCTGAGCG
AGGTAACACATTCACCAAGGAACTCACACTATATGTACTCACTGATAAAT
GCATATTATTCCCTAACCTACGATCCCTTTGATTATCCATACCATTTCCC
AACCCCCTGACACTCACCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_l17.b1 MSMg01no091_l17.b1 CHROMAT_FILE:
MSMg01no091_l17.b1 PHD_FILE: MSMg01no091_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:20 2005
         (190 letters)



>mm_chr9_4611198_4611787
          Length = 590

 Score =  344 bits (178), Expect = 2e-99
 Identities = 187/190 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagagaaaccataaccacagtgctatgcactgtgtgtttgtaagcctgttatttcaaatt 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagagaaaccataaccacagtgccatgcactgtgtgtttgtaagcctgttatttcaaatt 260

                                                                       
Query: 61  attgaaggctaatagaatataattggttaataaagtacagcaggttaataaaacaaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgaaggctaatagaatataattggttaataaagtacagcaggttaataaaacaaaata 320

                                                                       
Query: 121 aaattatatttgattatagcataacaattacagaaagacaaggttaatttattgatgaag 180
           |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaattataattgattatagtataacaattacagaaagacaaggttaatttattgatgaag 380

                     
Query: 181 aaaacatgcc 190
           ||||||||||
Sbjct: 381 aaaacatgcc 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)