BAC Information

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BAC

Clone NameMSMg01-092A05
Chromosome9 (Build37)
Map Location 32,979,926 - 32,980,096
singlet/doubletsinglet
Overlap genenone
Upstream geneGrit, Kcnj5, Kcnj1, Fli1, LOC669759, LOC100041398, Ets1, LOC100041426
Downstream geneLOC100042343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092A05.T7 (MSMg01no092_a05.b1)MSMg01-092A05.TJ (MSMg01no092_a05.g1)
ACCAG309804AG309805
length988801
length of high quality
(start - end)
---171 (131 - 301)
definitionCHROMAT_FILE: MSMg01no092_a05.b1 PHD_FILE: MSMg01no092_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:43 2005CHROMAT_FILE: MSMg01no092_a05.g1 PHD_FILE: MSMg01no092_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTTTCTTTTCCNTTTTGGCTCTTTCTTTTTCCTCTTTCTTTCTCCNNC
NCCGCAAATACNNNCCACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCGCGCGAATTCATCGATGTTACCATCTTACAGAGT
TCTAGTCATAAACAAATGTCTGAGATTTTGTGAATACGACATTCTTATTA
CCCCACATCACGGATGGCATGTGTCGACAGTATGACTCTTAATCGTATGG
TACGTCTCTGTCTGACTCCTTCTGGCGTGGTCAGTATCGTTACTTCCGTT
ACAGGCGATCATCTGCTATAATTGGCTTTATCTTACCACTGCAACTAGTA
CAGTCGAATTCTTATTTCCTACAAATTTCTTCTATTCTGTACTATGACAC
CAGCGGAAACGTACATGCCTGTCTTTGGCAATACCCCATCCCTACTTCGC
TGAGCATGTGCTAACGTTCGTCATCACTGCACTATTCATATAACTGCTTC
TGTCACCACCCCGCCCCCCGTGTTCTTCGTTCGGCACCAAAGCCGCTGCC
TCATCTATCCTCGCTCGCCATGCAACATACTACCCATGTTTAATTCTATC
CGCGTATCTAGCTATTACTAATTCGGCCTCAACTGACTGGCAACAAGTAC
CCGATTCCACTCATCGTTTGATCCTATTCCGGTACTTTTGCTTACTTGAA
CTCCTTGCCCCACTCCCCCCTCAACAGCTTATCGCCTTGTATACTCATCA
CCACTCCTGTACGCCCAAACCTTTCCACTTTGGTCTTCCTCCCCACTCAC
CAATCCGATACACACTCAACGCTCAATCCACTTCCCTCGAATCGAATTGT
CCTCCGTTTCCTGGCTCCCCCAACTTGTGTTTTCTTGTCTCCTTCCTTGC
CTATCTTCCTGCTTTATCCTCTCTCGTCACCTCCCTCTTCGCTTCTTGGC
CTAATATACCCGCCCCTGGCCCACTTTGCCTCGTTTCT
CTTTTTCTCCNCTCNNCTTTTTTTTTTCTTCTTTTTTCCTTTTTTCTCCC
CCTTCTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGGGGTGCAGTAGGGAGG
CTTACTATCTCAACTATTTACAGATTGACCTATTTATACTGGTGACATCT
GAAAATGTTTCATATACTTATGCAGTGGTTTTCTTAAAGCAAAATGTCTT
TTTCTAGGTATTTTTTAACAAACTGAATATGGATGGCAAATGGAAAGTGT
TACAAGCCAAAAAGTGTGGGGGAAAGCAAGACAGCACAATACAAATAATA
CTAAAAATTAAAAACATGCACAGGTAAAATCAATAGCATGAAGAATTAGT
AACAATTCTAAGGACTTATTTGAATACTGCCCAATACTGTATTGATTATC
CCTGAGACTGGATTTAAGGTTACTCTGGTGAAAAAGACATAGTTTATTCT
ATTATACAGGACTGTCTAGTATAGGGCAACAGCCTTTGAGATCTTTAATA
CGACAGCAAATCCCTCATGTAAGCTAGAGGTACCTTTTTGCACGGAGACG
TAATACATGATCACTTATAGTTCCAACAAATTGATTTAAGTTGATCCACT
AAAATTAATTTACCCATCAATGATACATATATGAATCGCCCCCCTATCCG
GTTACACCATTTTCAACTAAAGCCTGTGCCATGACAAACCATCCTTATCG
CCTTTATCTGACAACTTGGTTTCTGCTCCCCTTTTCCCGCATTAACACTG
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_a05.g1 MSMg01no092_a05.g1 CHROMAT_FILE:
MSMg01no092_a05.g1 PHD_FILE: MSMg01no092_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:43 2005
         (171 letters)



>mm_chr9_32979726_32980296
          Length = 571

 Score =  315 bits (163), Expect = 8e-91
 Identities = 169/171 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaggggtgcagtagggaggcttactatctcaactatttacagattgacctatttatact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 371 acaggggtgcagtagggaggcttactatctcaactatttacagattgaattatttatact 312

                                                                       
Query: 61  ggtgacatctgaaaatgtttcatatacttatgcagtggttttcttaaagcaaaatgtctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ggtgacatctgaaaatgtttcatatacttatgcagtggttttcttaaagcaaaatgtctt 252

                                                              
Query: 121 tttctaggtattttttaacaaactgaatatggatggcaaatggaaagtgtt 171
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tttctaggtattttttaacaaactgaatatggatggcaaatggaaagtgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 571
Length adjustment: 8
Effective length of query: 163
Effective length of database: 563
Effective search space:    91769
Effective search space used:    91769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)