Query= MSMg01no092_a12.b1 MSMg01no092_a12.b1 CHROMAT_FILE:
MSMg01no092_a12.b1 PHD_FILE: MSMg01no092_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:44 2005
(308 letters)
>mm_chr9_78630705_78631413
Length = 709
Score = 551 bits (285), Expect = e-161
Identities = 300/305 (98%), Gaps = 1/305 (0%)
Strand = Plus / Minus
Query: 5 gaattcttttgatctccactttctgaaa-ataaggcacctgtaaggcagattcagccaca 63
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 509 gaattcttttgatctctactttctgaaacataaggcacctgtaaggcagattcagccaca 450
Query: 64 aataaaaggcatgtaaatgtgaggcaaatgtggaaagagttagaactcacaattcataac 123
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 449 aataaaaggcatgtaaatgtgaggcaaatgtggaaagagtaagaactcacaattcataac 390
Query: 124 atatgttggtctggtgggggtctctcctcccctcgtggccaggactagaatccacggcac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 atatgttggtctggtgggggtctctcctcccctcgtggccaggactagaatccacggcac 330
Query: 184 tctaaggagcaccctgcccctgtcctcttatgggttttcatctgggtttcagggagtttg 243
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 329 tctaaggagcaccctgcccctgtcctcttaagggttttcatctgggtttcagggagtttg 270
Query: 244 cttctttccctgtcttctttcttggcatgaactacaatgagggtgggagacttttcactt 303
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 269 cttctttccctgtcttctttcttggcatgaactacaataagggtgggagacttttcactt 210
Query: 304 attca 308
|||||
Sbjct: 209 attca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 709
Length adjustment: 9
Effective length of query: 299
Effective length of database: 700
Effective search space: 209300
Effective search space used: 209300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no092_a12.g1 MSMg01no092_a12.g1 CHROMAT_FILE:
MSMg01no092_a12.g1 PHD_FILE: MSMg01no092_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:44 2005
(309 letters)
>mm_chr9_78498476_78499184
Length = 709
Score = 543 bits (281), Expect = e-159
Identities = 302/309 (97%)
Strand = Plus / Plus
Query: 1 tttatcagcaagtcaggtaaatgtaggtaaattactgcatctgaatcctactcatagtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttatcagcaagtcaggtaaatgtaggtaaattactgcatctgaatcctactcatagtgg 260
Query: 61 attcccttgttagcaagccaccatccagctgatctgtgtgccagattgcaacaaaacaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 attcccttgttagcaagccaccatccagctgatctgtgtgccagattgcaacaaaactaa 320
Query: 121 agactcttcatatggttggacatgttggctgagagcaccagaatttctgataagacagaa 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 agactcttcatatggttggacatgttggctgagagcatcagaatttctgataagacagaa 380
Query: 181 agcacagaagcataggacattcccggagtctggcttcgtctgtgccttacagtgtctaaa 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcaaagaagcataggacattcccggagtctggcttcgtctgtgccttacagtgtctaaa 440
Query: 241 cttgcgatgtatatactttttgttgctgtgttgagacacagtttctctgtgtagacttct 300
|||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 441 cttgtgatgtatatactttttgttgttgtgttgagacacagtttctctgtgtagtcttct 500
Query: 301 ttgtcgtca 309
|||| ||||
Sbjct: 501 ttgttgtca 509
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space: 210000
Effective search space used: 210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
