BAC Information

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BAC

Clone NameMSMg01-092F15
Chromosome9 (Build37)
Map Location 38,674,019 - 38,674,546
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26
Downstream geneOlfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092F15.T7 (MSMg01no092_f15.b1)MSMg01-092F15.TJ (MSMg01no092_f15.g1)
ACCAG310061AG310062
length699693
length of high quality
(start - end)		185 (142 - 326)528 (78 - 605)
definitionCHROMAT_FILE: MSMg01no092_f15.b1 PHD_FILE: MSMg01no092_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:11 2005CHROMAT_FILE: MSMg01no092_f15.g1 PHD_FILE: MSMg01no092_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCATTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCAACTGAGCCATACTGGATGGCTGAGAAGCACCTGA
AAAAATGTTCTACATCCTTAATCTTTTAGCCACATGAAGTCAAAGCAACC
CAGAGATTCCACCTCACACCAGTCAGAATAGCTAAGATCAAAAATTCAGG
TGACAGCAGATGCTGGTGAAGATGTGGAGAAAGAGGCACACTCCTCCTTT
CTTGGTTGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCCAGCAG
TTCTTCAGAAAATTGGACATAGTACTATTGTAAGATCCAGCAATTCCTCT
CAGTATAGCATTTGATATGTTTATGACCCCCCCCCCCCACTAAAAAAATA
AGTGGATATTAGTCCAGAAGCTCTGAATATCCAAGATACAATTCACAGAT
TAGGTGAGGCTCATGAAGAATGACGACCACCGCATGAATACTTTGGCCCT
TTTTAGAAGTGGGAGCAAAATACACATTGGAGGAGATACAGAGACAAACT
GTGGAGTATATACTATCGGAAAGGCCATCTTGTGGATACTTTCCATTTAC
AGTTACCCCGTTCATATTTTATTGTGGATGCCTACCAGTGTTTGTCGACA
GGAGCCTGAGATGTTTTGCCGGTTGTTGTAAAATACCTAAGTGCATGCN

NCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGAGAGTTGTATTCTAATTCT
CACTTCACACTGAAACTCACCAAACGACTTCCCCAAAGTGTTATACTGGT
CAGCAATGAAGTCAGCCTTTGAAATGAAGCCTTAACTGATGGTGCGTCTA
TCCACTATTTCAGTGTTTTAATCTAATTTGTCTTTTTGCCCAAAATATAT
GGCAATAACTAATGTTATAGACAACTGTATTTCCAGGTGCACACTCCGGT
GATTTCAACATATTCATGTACTCTCTAACTGTCTATGAGAGGACTATGGA
AACACTCATTTGAAATCATAATTACTTGTTTGTTGATTTTGTGCTTTGTC
TTCAATGACCATCAGAAGACTATATTGTAGGAAATACATGTCAAATCTAT
TCACACAGGCCTTATTTTCCTTGCAGGATGCTTTATAAGTATATATTTTT
TGTTTTGTTTCCAAATATTTAATTTCTCTTTTGACAAGCTTTTTTAAAGC
CAGAAACATCTATTTTGCCTTTTTACATATTTTTCAAGACAAAGTTTTCT
AGAAATTAAACAAAACTTTGAGATAAATTACTCTTTTTGGAATTAGGCTC
ACGTTTTAAACCTCTCTAGAATGAGATCCATTGCTCAAGCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_f15.g1 MSMg01no092_f15.g1 CHROMAT_FILE:
MSMg01no092_f15.g1 PHD_FILE: MSMg01no092_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:11 2005
         (528 letters)



>mm_chr9_38673819_38674746
          Length = 928

 Score =  975 bits (504), Expect = 0.0
 Identities = 522/528 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagagagttgtattctaattctcacttcacactgaaactcaccaaacgacttccccaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 ttagagagttgtattctaattctcacttcacactgaaactcaccaaaggacttccccaaa 260

                                                                       
Query: 61  gtgttatactggtcagcaatgaagtcagcctttgaaatgaagccttaactgatggtgcgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgttatactggtcagcaatgaagtcagcctttgaaatgaagccttaactgatggtgcgt 320

                                                                       
Query: 121 ctatccactatttcagtgttttaatctaatttgtctttttgcccaaaatatatggcaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctatccactatttcagtgttttaatctaatttgtctttttgcccaaaatatatggcaata 380

                                                                       
Query: 181 actaatgttatagacaactgtatttccaggtgcacactccggtgatttcaacatattcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actaatgttatagacaactgtatttccaggtgcacactccggtgatttcaacatattcat 440

                                                                       
Query: 241 gtactctctaactgtctatgagaggactatggaaacactcatttgaaatcataattactt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtactctctaactgtctatgagaggactatggaaacactcatttgaaatcataattactt 500

                                                                       
Query: 301 gtttgttgattttgtgctttgtcttcaatgaccatcagaagactatattgtaggaaatac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtttgttgattttgtgctttgtcttcaatgaccatcagaagactatattgtaggaaatac 560

                                                                       
Query: 361 atgtcaaatctattcacacaggccttattttccttgcaggatgctttataagtatatatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 atgtcaaatctattcacacaggccttattttccttgcaggatgctttgtaagtatatatt 620

                                                                       
Query: 421 ttttgttttgtttccaaatatttaatttctcttttgacaagcttttttaaagccagaaac 480
           ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 621 ttttgttttgtttccaaatatttaatttctcttttgataagctttattaaagccagaaac 680

                                                           
Query: 481 atctattttgcctttttacatatttttcaagacaaagttttctagaaa 528
           ||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 681 atctattttgcatttttacatatttttcaagacgaagttttctagaaa 728


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space:   475524
Effective search space used:   475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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