BAC Information

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BAC

Clone NameMSMg01-093O01
Chromosome9 (Build37)
Map Location 90,711,434 - 90,711,616
singlet/doubletsinglet
Overlap genenone
Upstream geneRasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777, LOC100039925
Downstream geneEG434428, LOC621576, Zic1, Zic4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-093O01.T7 (MSMg01no093_o01.b1)MSMg01-093O01.TJ (MSMg01no093_o01.g1)
ACCAG311201AG311202
length1,2661,100
length of high quality
(start - end)
183 (110 - 292)279 (62 - 340)
definitionCHROMAT_FILE: MSMg01no093_o01.b1 PHD_FILE: MSMg01no093_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:09 2005CHROMAT_FILE: MSMg01no093_o01.g1 PHD_FILE: MSMg01no093_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATGCGGCCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTCTTGTTCT
TGGTTTTCCATTTAAAAAGAGAAGAAATAAAACAAATGATTTTGTATCAC
CTTAATCTCAAGGAAAATATTGCAAAATGATTAAAATATATAATTCTAAA
TTCTAAATATTGAGTTGAACCACTTTTGTTCAATAGATTTATTCTCTTGA
GGGCTTGATAAATAACAATTACTTTGTGTTTATAACTTAATGTAAATAAT
AAAATTAAAATTTAATCGCTTAGAATATTTTTCGCTTATTTCCACTGTGT
GATATATTCTTTGTCATCCATTCCTAAGTTAACACAAAAGAGCACTATTA
AATAATGCTTCTCTAATGTTAATATATCACGAATAATATTTTTTGACGCT
TGCTTCTATATTCAAAAATATGACTTGCATTATTTTCCACACATCTCTGT
TTTAATTATACTTATACCATATACACTTATATAATCTATGTATATTTTTA
TCTTTAAAAATTCATTTCCTTCTTGAGATTCAGTTTATTTCCATCTTTCG
CTCCTAAATTAATTCTCCAATATTTTCCTTTTTGATCTTTTCTTAACAAC
TCTCCAATTATGTCCTCTATGTTTTCCTCCTTCTGTCATTGTTTATTTTT
AACTCCCTCTTTCTTCCTTTATTATCTTCTTCTGAACCTCCCTTTTTTTT
CCTTAACCGTCTTTACTTTAAAATTGGTCCCTCTAATGATTTTTCTTAAT
TTGTTTTAATTGCCTTCTTTTATTTTCTCCCTTTCATTGTCTCATTTCTT
CTCTTTCGATTCTTATTTTTCTTACTTATATAACTCTTCCTTTAATCTTC
TCGTATATTCTATCTCACTATCATAATTTTTCTTCCCTTTTATTTCTTTT
CTTTTCTTTTTCTTTTTTAAATAAATTTCTTAACTTTTCTTATCTCTACT
ATTAATATCCTTACCTTTAGTTACTCTCTTTTCTTTATCATTTATCATAT
ATATTTTCTATAACTTTCTTTTTTATTTTTCTTTTCTTTCTTCTCATCTC
TCTCTATTTTTCCTTTCCTTATTACCCTACATCTTACTATATCCTTCTTT
CATTTCATTTTTTCTACTTACATTTTACAAATACATCAATCTGCATCTAC
TTATTTACTCTCTCCATACTATTTAATTCCCTATTATTTATATTAATTTA
TCCTTTTCTTATTTATTTTATTCTTATTCTCAATCTCTTTCTATATTTAT
GCTTCTTGATATCATT
GGACCGCGGCCTTTAAATTGGATTTATCTGGTCTTGAGCCTTTTTAGCTC
CCTTTAAAAGTCTATCATTTTTAAAAATTCTCCGCTTGTCGTGTGCTTGT
TTAGGTAGTTGTCTTCTCCTTGTTCTTAAAATTTGGTGGTCTGACTGAAT
CTAGAAATTCATTTTTTGAGGTTTTTCAGATATTCCCTTATAGTATTCTG
AATTGCCTTGGTGTTTATTGTAATGTTTCCCTGGTCATTTCTGATTCTGG
TCATTTTGGTCCTTTCTTTCTCTTTTTCTGGTTAGTTGTGCCAAGAGTCT
GTCTGTATTTTCATTGTTCCAGACAACTAACTCTTGTACTCTTCAAGCCT
TTGCATTGTTTTTTTAATTTCTATTTCATTCATTTCCCCCCTTTTTTAAA
AAAATTCTTTACCATCAACTTGGTTTTGATTTTATTTGTTCTTCATTCGT
TTAAATTTCTGAGCTACCTCACCGTAACAGGCTTCCAGATCTTACTACGC
TTGTAATCATGTCTCATACACCATCTCTGATGTAAACACCATAAACTCTG
ATCCTTACACTTGCCATATTGGGACCTAAGATCTATTCCCTACTTTTCTT
CTTTCTCCCATTATTATCTATGTTCCTAATTATAATCCCTCGCTTTTTGT
CCCCTTTCTTTTTCTTCTTTGTCTCTCTTTTTGTGCTCTTTTATGATTTT
TTTCCTTTTGTTTTTTTATTATTTAGAACCTTTTTGTTCTCACATTCCCC
TTGGTTTTGCTTCTTTTTTTTTATTTGATGACTTTTGATCCTGCTTCTGA
TTACCTTTTTTTTCTTTCTACCCTTTTATTGTTTTTCGCTGTTCTTGTCT
TCTGTTCTTATCTTTTTCTGAACTTACCCTTAATTCTCCTGTAATTTCTG
TTCTCTTTCTTTTTTTTTTTTTTTTTTTCTCTTCCTTCTCTCTTTTTTTT
CCTTTCTTTTTTTCTCTTTTCTTCTTTATTTTTTCTTTTTTTTCTTGTCT
CCACCTCTATTGTCTTTCCACATAACTCCTAATTTGCTCTTCCTCTATAT
TCTAATATGGGTATAATTTTCTCCTCCTTTTTTATTATACTTCTTTTATG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no093_o01.b1 MSMg01no093_o01.b1 CHROMAT_FILE:
MSMg01no093_o01.b1 PHD_FILE: MSMg01no093_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:09 2005
         (183 letters)



>mm_chr9_90711284_90711866
          Length = 583

 Score =  339 bits (175), Expect = 9e-98
 Identities = 181/183 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggaaaatattgcaaaatgattaaaatatataattctaaattctaaatattgagttgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aaggaaaatattgcaaaatgattaaaatatataattctaaattctaaatattgagttgaa 274

                                                                       
Query: 61  ccacttttgttcaatagatttattctcttgagggcttgataaataacaattactttgtgt 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ccacatttgttcaatagatttattctcttgagggcttgataaataacaattactttgtgt 214

                                                                       
Query: 121 ttataacttaatgtaaataataaaattaaaatttaatcgcttagaatatttttcgcttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 213 ttataacttaatgtaaataataaaattaaaatttaatcgcttagaatattttttgcttat 154

              
Query: 181 ttc 183
           |||
Sbjct: 153 ttc 151


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 583
Length adjustment: 8
Effective length of query: 175
Effective length of database: 575
Effective search space:   100625
Effective search space used:   100625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)