BAC Information

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BAC

Clone NameMSMg01-094B13
Chromosome9 (Build37)
Map Location 17,636,870 - 17,637,468
singlet/doubletsinglet
Overlap genenone
Upstream geneEG434373, LOC100040074, LOC100040090, LOC244710, LOC100040508
Downstream geneEG665548, LOC665554, LOC665567, Chordc1, Naalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1, Muc16, Olfr24, Olfr828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094B13.T7 (MSMg01no094_b13.b1)MSMg01-094B13.TJ (MSMg01no094_b13.g1)
ACCAG311361AG311362
length675694
length of high quality
(start - end)
480 (43 - 522)599 (73 - 671)
definitionCHROMAT_FILE: MSMg01no094_b13.b1 PHD_FILE: MSMg01no094_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:36 2005CHROMAT_FILE: MSMg01no094_b13.g1 PHD_FILE: MSMg01no094_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTAGATCTTTCTAAGACTTTTTTCATGAATGGATGTTGGATTTTGTCAA
ATGCATTCTCAAAATCTAAGGAGATGATCATGTGTCTTTTGTTTTGAATT
TGTTTATATAGTAGATTACATTTATGAATTTCTGTATATTGAATCATTCC
TGCATCCCTGCGATGAAGCCTACTTCATCATGATGGAAGATCATTTTGAT
GTTTTCTTAGAATCCATTTGTGAGAATTTTATTGAGTATTTTTGCATCGA
TATTCATAAGGGAAATTGGTTTGAAGTTCTCTTTCCTTGTTGGGTCTTTG
TGTGGTTTAAGTATCAGATTAATTGTGGCTTCATAGAATGACTTGGGTAG
AGTATCTTCTGTTTCTATTTTGTTGAATAGTTTGGGATGAATTAGAAATA
GATCTTCTTTGAAGGTGTGATAGAAATCTGCACAAAACCTATTAGGTCCT
GAGCTTTTTTAGTTGGGAGACTATTAAGGACTGCTTCAAATTTTTTAGGG
CATATGGGACTGTTTATATCATTAATCTGATCCTGATTTAACTTTGTGAC
ATGATGTCTGTCAAGCAAATTGTCCCTTTCATATTGCTTTTCTAATTTTG
TTGACTATAGCCTTTTGTAGTACAA
AATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATACTAGCTGGATTAGTTTACATTCCT
ACCAACAGTATAGAATGGTTCACTTTTGTACATATAAACATCAGAGTTTG
TTGGTCCCTACCTCCAATTTTTCCATCTCAGCCACTGTTTGCTGTACTTC
TACCCCTCCTAGTTCCCTGCACCTCCCTTTTTACCCAGATCTACTCTTCC
ACATCCCTAAAATAAGAGTGAGAAAAGGAAAAAAAATTAGGCTTCCCAGG
GATATCAACCAAGCACAGCATAACAAATTACTATAAGACTAGACACAAAC
CCTCATATCAAAGTTGGACAAGGTTTACTCAATAGGAGTAAAAGGTCCCC
AAACACAGATAGAAGAGTCAGAGATACCCCCATGCCCACAGTTATGTGTC
CTACAAGAATACCAAACAACACAAGCCATAACTTAAATGCAAATGACCTT
GAAGAGGTGAGGGATGGCAAGGTCGAGCTAAGGCCTGAAACCCCAGGGAC
TCTGAAAGGTTTGTAGGAACTTTGCATGCTCCCAGCACCAGGCCCCTGTC
ACATAGCCACAGGCCCCCATAGAGAGAATTGTGCCCTTCAGTCATATAGG
GGAAGAGTCCCCAAGCCCCTCCATATGTAGAAGAGGTATCCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_b13.g1 MSMg01no094_b13.g1 CHROMAT_FILE:
MSMg01no094_b13.g1 PHD_FILE: MSMg01no094_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:36 2005
         (599 letters)



>mm_chr9_17636670_17637668
          Length = 999

 Score = 1151 bits (595), Expect = 0.0
 Identities = 598/599 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catactagctggattagtttacattcctaccaacagtatagaatggttcacttttgtaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catactagctggattagtttacattcctaccaacagtatagaatggttcacttttgtaca 260

                                                                       
Query: 61  tataaacatcagagtttgttggtccctacctccaatttttccatctcagccactgtttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tataaacatcagagtttgttggtccctacctccaatttttccatctcagccactgtttgc 320

                                                                       
Query: 121 tgtacttctacccctcctagttccctgcacctccctttttacccagatctactcttccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtacttctacccctcctagttccctgcacctccctttttacccagatctactcttccac 380

                                                                       
Query: 181 atccctaaaataagagtgagaaaaggaaaaaaaattaggcttcccagggatatcaaccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atccctaaaataagagtgagaaaaggaaaaaaaattaggcttcccagggatatcaaccaa 440

                                                                       
Query: 241 gcacagcataacaaattactataagactagacacaaaccctcatatcaaagttggacaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcacagcataacaaattactataagactagacacaaaccctcatatcaaagttggacaag 500

                                                                       
Query: 301 gtttactcaataggagtaaaaggtccccaaacacagatagaagagtcagagataccccca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtttactcaataggagtaaaaggtccccaaacacagatagaagagtcagagataccccca 560

                                                                       
Query: 361 tgcccacagttatgtgtcctacaagaataccaaacaacacaagccataacttaaatgcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcccacagttatgtgtcctacaagaataccaaacaacacaagccataacttaaatgcaa 620

                                                                       
Query: 421 atgaccttgaagaggtgagggatggcaaggtcgagctaaggcctgaaaccccagggactc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgaccttgaagaggtgagggatggcaaggtcgagctaaggcctgaaaccccagggactc 680

                                                                       
Query: 481 tgaaaggtttgtaggaactttgcatgctcccagcaccaggcccctgtcacatagccacag 540
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgaaaggtttgtaggaactttacatgctcccagcaccaggcccctgtcacatagccacag 740

                                                                      
Query: 541 gcccccatagagagaattgtgcccttcagtcatataggggaagagtccccaagcccctc 599
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcccccatagagagaattgtgcccttcagtcatataggggaagagtccccaagcccctc 799


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)