Query= MSMg01no094_e12.b1 MSMg01no094_e12.b1 CHROMAT_FILE:
MSMg01no094_e12.b1 PHD_FILE: MSMg01no094_e12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:52 2005
(597 letters)
>mm_chr9_85225295_85226291
Length = 997
Score = 1040 bits (538), Expect = 0.0
Identities = 556/566 (98%), Gaps = 7/566 (1%)
Strand = Plus / Minus
Query: 39 ttgctctttctggtttgtgctcacaattcgagggtatggccacttgcttcctgcaccggc 98
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 997 ttgctctttctggtttgtgctcacaattcgagggtatggtcacttgcttcctgcaccggc 938
Query: 99 caccatttctgctggttgccatgccttttcatcatcatgatggtctcataaccctctaga 158
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 937 caccatttctgctggttgccataccttttcatcatcatgatggtctcataaccctctaga 878
Query: 159 a-------ccaaaataaatccgcccttctataatttttttgtcatgatacttttattaca 211
| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 accacaagccaaaataaatccgcccttctataatttttttgtcatgatacttttattaca 818
Query: 212 actacagaaaacaactaataaagttactaataacatattaagcaataacttgtaacatta 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 actacagaaaacaactaataaagttactaataacatattaagcaataacttgtaacatta 758
Query: 272 tttttgaaatagcttagaaatgttatatcctgggatgttgctagtctttgaaacatgtat 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 tttttgaaatagcttagaaatgttatatcctgggatgttgctagtctttgaaacatgtat 698
Query: 332 ttccttgaagaaaacaataaaaatcttttgttttttacaagcacctgtaagttttcttag 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ttccttgaagaaaacaataaaaatcttttgttttttacaagcacctgtaagttttcttag 638
Query: 392 aaacagttcctctggacattttaacttctacatagaatgatgtgataagttgctatggag 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 aaacagttcctctggacattttaacttctacatagaatgatgtgataagttgctatggag 578
Query: 452 ccactgctcactggggagcaaagaggtctcaggaaatctgtgagatgacacctgtgtcca 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ccactgctcactggggagcaaagaggtctcaggaaatctgtgagatgacacctgtgtcca 518
Query: 512 tgattggaaaggaagctgtcacctaactgattgtcaccaattactgagatttgtcctctg 571
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 517 tgattggaaaggaagctgtcacctaactggttgtcaccaattactgagatttgtcctctg 458
Query: 572 aatgaggcggatggtcagagctcaca 597
||||||||||||||||||||||||||
Sbjct: 457 aatgaggcggatggtcagagctcaca 432
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space: 579369
Effective search space used: 579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no094_e12.g1 MSMg01no094_e12.g1 CHROMAT_FILE:
MSMg01no094_e12.g1 PHD_FILE: MSMg01no094_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:52 2005
(567 letters)
>mm_chr9_85185123_85186085
Length = 963
Score = 1019 bits (527), Expect = 0.0
Identities = 556/567 (98%), Gaps = 4/567 (0%)
Strand = Plus / Plus
Query: 1 ttgtacatggcaggaagaaagcgtaggtgaaaaggtgattattatctcagccctttgtat 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 ttgtacatggcaggaagaaagcgtaggtgaaaaggtgattattatctcagtaatttgtat 260
Query: 61 tttgattctacaactctcaagaatttagtgacaactacttttaaacattaataaaagaat 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgattctacaactctcaagaattcagtgacaactacttttaaacattaataaaagaat 320
Query: 121 ctgaagttctcagaagaaataaaggccacagaggaaaagaagtgtctaaggataactgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgaagttctcagaagaaataaaggccacagaggaaaagaagtgtctaaggataactgag 380
Query: 181 tgttgcctaataaacctagccaagagcatccccaaactgaaaagaaataataggagaaaa 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 tgttgcctaataaacctagccaagagcatccccaaactgaaaggaaataataggagaaaa 440
Query: 241 ccacaggttttagatgaccttattaccaaatctcagaaattcaatggcagaatggaaaat 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccacaggttttggatgaccttattaccaaatctcagaaattcaatggcagaatggaaaat 500
Query: 301 ggactgagaataagaatttaaaagacaagaaaaaacatctacaaaaatgagtcatagcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggactgagaataagaatttaaaagacaagaaaaaacatctacaaaaatgagtcatagcct 560
Query: 361 cgactttcacctgaaagggttgattttcttctagcttaaaaaaaaaaaatgatttatttg 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 cgactttcacctgaaagggttgattttcttctagcttaaaaaaaaa---tgatttatttg 617
Query: 421 tgcttccaaaaaaagtctatttgactcgaatttttcatactctttccaatcctactgaaa 480
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tgcttccaaaaaa-gtctatttgactcgaatttttcatactctttccaatcctactgaaa 676
Query: 481 ttccaagtcactaatttatagattatttataaaaatattttcagggatgaaatcaagcct 540
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ttccaagtcactaatgtatagattatttataaaaatattttcagggatgaaatcaagcct 736
Query: 541 tagtgttaagcactcaggcttctctta 567
|||||||||||||||||||||||||||
Sbjct: 737 tagtgttaagcactcaggcttctctta 763
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 963
Length adjustment: 10
Effective length of query: 557
Effective length of database: 953
Effective search space: 530821
Effective search space used: 530821
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
