BAC Information

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BAC

Clone NameMSMg01-094K17
Chromosome9 (Build37)
Map Location 53,870,155 - 53,870,441
singlet/doubletsinglet
Overlap genenone
Upstream geneDdx10, Exph5, Kdelc2, 4930550C14Rik, Atm, Npat, Acat1, Cul5, Rab39, EG434404, LOC100038958, Slc35f2, Sln, LOC100038996, Elmod1
Downstream geneTnfaip8l3, Cyp19a1, LOC100039064, Gldn, Dmxl2, 4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2, C630028N24Rik, AY074887, Psma4, Chrna5, Chrna3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094K17.T7 (MSMg01no094_k17.b1)MSMg01-094K17.TJ (MSMg01no094_k17.g1)
ACCAG311773AG311774
length680698
length of high quality
(start - end)
292 (55 - 346)311 (109 - 419)
definitionCHROMAT_FILE: MSMg01no094_k17.b1 PHD_FILE: MSMg01no094_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:25 2005CHROMAT_FILE: MSMg01no094_k17.g1 PHD_FILE: MSMg01no094_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGCCGCTATACGACTCCTATATCGGAGAGGACCGCGGAATTCCTAAGC
TTCCTTCCCCCCTACTGAGTCTTGAGATAGTTTTGTGACTATATTGGAGA
CTTACTTCACCGCAGATCTTTCAAAAATTCATAATCTATTTCCAATCAAA
TTCTTATTTACTTTCATTTTTTAGTCATTTACTTCTAAGAAGCAAAATTA
TGTTGATAATTATTACAAAAGTATCATTATCATAATAAAAAATGTGTCCT
GGAACTCACTTTGTAGGCCAGGCTGACCTTGAACTCAGAAATCTGCCTGC
CTCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCACCACTG
TTCGGCTGGACATTTCTTGATCCTAAGAAATCATGACTAATACACAGAAT
AATTCACAACACAATACATGGAGCTCAACTTTTAACTTTATTTATATTAG
TTAACTCTCCGCAGTTGTCTTCCATTTGTTAATTGCTTAAAGTGATTTTA
TATACCTAGAGATCTATGTCATTCAATCCAGTAGCTTTGAGTTCCAAGGC
CACTTTTCAATATTTGTTGTGTGATACTGGGGCTGGAACTCCAGACCACA
TTTCTGCATTGCCAGGTTTCCTGTTGGACTCTATAGTTCCGGAGTTTGCA
GGGCTTGATTAGTGCAGGAGATATTCTGCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCATTACAGACATGAATGGCAGCCTACATTACATAACATAATAGT
AGAAACAAGGTGGGTTGTGGTTTAAGGAGGAACTAGAGTATTGTATTATT
CATGAAAAAGTTAGTAGAACAGTACTTCCCTGGTGCATGTTTTTCTCTAG
GCCCAGAGGAATAGCATAATTAGGTATTTACTAAGGGACCCCTGGTGGTG
GGTTAAACAATAGACTAGAATTGCACCTGGGCATTAACCCTTTCATCGGG
ATCCTGTGAATAGCTGATTTTAGATAGGGCTGATCTTGAAAGAACCTAGT
GGGGAAACCCCCACTCTGTTCCCAATTCGGCGTGCATCCAAAAATCACAA
ACAGACAGTCTTGATGTAAATACACCAGGTAGTTTAATGGCGGAGCTCCT
GGCCGAAACATATCTCATGCAAGAGACAGTAGATTCGACCACTAGGTTTG
GAAGCTAGGGGTTTTTATAGAAAAGGAGCTGGAGCTGCCCGAGGAATTGG
TGCGCGTTCACATGATTGCCCCATTTAAACCTCTTTTCCCCTGCCCTTGC
CCCCATCTTTCACTTTTTTCCCCCCGCCCTTCCATTTCCAAGCCCTTATC
CCCGTACCGGACCTGTTTTCCCTTTTCCCCCCCCCCCCCTTTGTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_k17.b1 MSMg01no094_k17.b1 CHROMAT_FILE:
MSMg01no094_k17.b1 PHD_FILE: MSMg01no094_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:25 2005
         (292 letters)



>mm_chr9_53869952_53870647
          Length = 696

 Score =  489 bits (253), Expect = e-143
 Identities = 279/293 (95%), Gaps = 10/293 (3%)
 Strand = Plus / Plus

                                                                       
Query: 4   ccccctactgagtcttgagatagttttgtgactatattggagacttacttcaccgcagat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||  ||||||
Sbjct: 204 ccccctactgagtcttgagatagttttgtgactatattggagacttacaacagagcagat 263

                                                                       
Query: 64  ctttcaaaaattcataatctatttccaatcaa----attcttatttactttcatttttta 119
           ||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||
Sbjct: 264 ctttcaaaaattcataatctatttccaatcaatcaaattcttatttactttcatttttta 323

                                                                       
Query: 120 gtcatttacttctaagaagcaaaattatgttgataattattacaaaagtatcattatcat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtcatttacttctaagaagcaaaattatgttgataattattacaaaagtatcattatcat 383

                                                                       
Query: 180 aataaaaaatgtgtcctggaactcactttgtaggccaggctgaccttgaactcagaaatc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aataaaaaatgtgtcctggaactcactttgtaggccaggctgaccttgaactcagaaatc 443

                                                                
Query: 240 tgcctgcctctgcctctgcctcccaagtgctgggattaaaggcgtgcaccacc 292
           ||||||||||||||||      |||||||||||||||||||||||||||||||
Sbjct: 444 tgcctgcctctgcctc------ccaagtgctgggattaaaggcgtgcaccacc 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 696
Length adjustment: 9
Effective length of query: 283
Effective length of database: 687
Effective search space:   194421
Effective search space used:   194421
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)