BAC Information

Click to search

BAC

Clone NameMSMg01-095B14
Chromosome9 (Build37)
Map Location 7,556,485 - 7,556,761
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039400, LOC100039418, EG547034, Dync2h1, LOC100039658, Dcun1d5, Mmp13, Mmp12, Mmp1b, Mmp3, Mmp1a, Mmp10
Downstream geneMmp8, Mmp27, Mmp20, Mmp7, LOC665057, LOC100039782, Tmem123, Birc2, Birc3, Yap1, EG665090, 9230110C19Rik, AK129341, LOC100039855, 1700018P22Rik, LOC665108, 1700128F08Rik, Trpc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095B14.T7 (MSMg01no095_b14.b1)MSMg01-095B14.TJ (MSMg01no095_b14.g1)
ACCAG312094AG312095
length702692
length of high quality
(start - end)
334 (25 - 358)289 (56 - 344)
definitionCHROMAT_FILE: MSMg01no095_b14.b1 PHD_FILE: MSMg01no095_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:00 2005CHROMAT_FILE: MSMg01no095_b14.g1 PHD_FILE: MSMg01no095_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCGCTATACGACTCCTATATCGAGAGGATCCGCGGAATTCTCACCTG
AGGAATACCGAATGGCTGAGAAGCACCTGAAAAAAATGTTCAATATCCTT
AATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCATCTCACAC
CACTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATACTGGTGA
GGATGTGGAGAAAGAGGACACTCCTCCATTGTTGGTGGGATTGCAAGCTT
GTACAACCACTCTGGAAATCAGTCTGGTGGTTCGTCAGAAAATTGAACAT
AGTACTACCGGAGGATCCCACAATACCTCTCCTGGGCATATATCCAGAAT
ATGTTCCAACTGCTAAGAAAGACACATGCTCCACTATGTGCATAACAGCC
TTATTTATAATAGGCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGA
GGAATGGATACAAAAAATGTGGCACATCTACACAATGGTGTACTACTCAG
CTATTAAAAGGAATGAATTTATGAAATCCCTAGGCAAATGATTGGACCTG
GAGGGCATCATCCTGAGTGAAGTAACCCAATCACAAAATAACTCATATGA
TATGTTCTCACTGATGAGTGCATATTAGCCCAGAAATTTAGAATACCCAT
AATACCAGATACAATTTGTGAAACACATGTAACTCAAGAAGAACGAAGAC
CA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAAGAGCTTCAGCTCTTCCTGAAACCAGTACTATTGTGGTCGATTA
TTTATGTCATGTTGACTCTGGAACTGTAGCATTTGCAAATTACTTCAGCT
GGGAAACCATGTATACACAGTACTTATTTACAGAAATGTTATGATCCAGA
TGTAACAAATAAATTGCAAAACTAGGAAGAGCAGCAAATACCTAAAGAAC
AACTCGGGGGATCACAATTATTTGGACTAAATCTACAGATTGCAGAACTG
AGAGAAACCATGAAGACATGCAATAAGGCATCAATTGGGTAAGAGTCAAG
GAAGAGGAGCTTCAGTTTTTTAAATTGTTGAATTAAGGAAGCATGATTGT
AGATTGAAGGGAAAAGCTAACGCATGATGTCAGAGGTGGTGACTTATAGA
GAGAAAGTGGCTAGGAGCTGGCACTGATACTAGTATTATTTGATGGGAGA
TGAAGGAAAAATGTATTTTTATTTCTTTTTCGCTTTTTTTTACTTTCCTC
CTTTTTTTTCTGTTTTGTTTTACATTCTTTATTAGATATTTTATTCATTT
ACATTTCAAATGTTATCCCGAAGTCCCCCTATACCCCCCCCCCACCCTGC
TCCCCTACCCACCCAACTCCTATTTCTTGCCTCCGGTGTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_b14.g1 MSMg01no095_b14.g1 CHROMAT_FILE:
MSMg01no095_b14.g1 PHD_FILE: MSMg01no095_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:00 2005
         (289 letters)



>mm_chr9_7556228_7556916
          Length = 689

 Score =  493 bits (255), Expect = e-144
 Identities = 275/289 (95%), Gaps = 12/289 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagagcttcagctcttcctgaaaccagtactattgtggtcgattatttatgtcatgttga 60
           |||||||||||||||||||||||||||||||||||||||||||||            |||
Sbjct: 534 aagagcttcagctcttcctgaaaccagtactattgtggtcgatta------------tga 487

                                                                       
Query: 61  ctctggaactgtagcatttgcaaattacttcagctgggaaaccatgtatacacagtactt 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 486 ctctggaactgtagcatttgcaaattactttagctgggaaaccatgtatacacagtactt 427

                                                                       
Query: 121 atttacagaaatgttatgatccagatgtaacaaataaattgcaaaactaggaagagcagc 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 atttacagaaatgttatgacccagatgtaacaaataaattgcaaaactaggaagagcagc 367

                                                                       
Query: 181 aaatacctaaagaacaactcgggggatcacaattatttggactaaatctacagattgcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaatacctaaagaacaactcgggggatcacaattatttggactaaatctacagattgcag 307

                                                            
Query: 241 aactgagagaaaccatgaagacatgcaataaggcatcaattgggtaaga 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aactgagagaaaccatgaagacatgcaataaggcatcaattgggtaaga 258


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)